SHOGoiN Cell Methylome: GSM2481572
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481572 Profile download | 7010000000000000000000-769 | Sequence Read Archive | SRP074598 | SRP074598_M45 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Zygote | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000224106 | CYP4F25P | cytochrome P450 family 4 subfamily F member 25, pseudogene | 3.7004 | 0.0000 |
| 2 | ENSG00000203897 | SPATA42 | spermatogenesis associated 42 | 3.1699 | 0.0000 |
| 3 | ENSG00000234940 | novel transcript | 2.8074 | 0.0000 | |
| 4 | ENSG00000244691 | RPL10AP1 | ribosomal protein L10a pseudogene 1 | 2.8074 | 0.0000 |
| 5 | ENSG00000137338 | PGBD1 | piggyBac transposable element derived 1 | 2.6627 | 0.0000 |
| 6 | ENSG00000279123 | novel transcript | 2.6156 | 0.0000 | |
| 7 | ENSG00000200597 | RNU1-87P | RNA, U1 small nuclear 87, pseudogene | 2.5850 | 0.0000 |
| 8 | ENSG00000206847 | NA | 2.5850 | 0.0000 | |
| 9 | ENSG00000223225 | RNU6-1054P | RNA, U6 small nuclear 1054, pseudogene | 2.5850 | 0.0000 |
| 10 | ENSG00000227107 | novel transcript | 2.5850 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000158258 | CLSTN2 | calsyntenin 2 | -2.0000 | 1.0000 |
| 63340 | ENSG00000155313 | USP25 | ubiquitin specific peptidase 25 | -2.0000 | 1.0000 |
| 63339 | ENSG00000155115 | GTF3C6 | general transcription factor IIIC subunit 6 | -2.0000 | 1.0000 |
| 63338 | ENSG00000146378 | TAAR2 | trace amine associated receptor 2 (gene/pseudogene) | -2.0000 | 1.0000 |
| 63337 | ENSG00000145075 | CCDC39 | coiled-coil domain containing 39 | -2.0000 | 1.0000 |
| 63336 | ENSG00000135929 | CYP27A1 | cytochrome P450 family 27 subfamily A member 1 | -2.0000 | 1.0000 |
| 63335 | ENSG00000120563 | LYZL1 | lysozyme like 1 | -2.0000 | 1.0000 |
| 63334 | ENSG00000115138 | POMC | proopiomelanocortin | -2.0000 | 0.6274 |
| 63333 | ENSG00000110002 | VWA5A | von Willebrand factor A domain containing 5A | -2.0000 | 1.0000 |
| 63332 | ENSG00000096006 | CRISP3 | cysteine rich secretory protein 3 | -2.0000 | 1.0000 |
