Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481572

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481572


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7010000000000000000000-769Sequence Read ArchiveSRP074598SRP074598_M45Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeZygoteHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000224106 CYP4F25P cytochrome P450 family 4 subfamily F member 25, pseudogene 3.7004 0.0000
2 ENSG00000203897 SPATA42 spermatogenesis associated 42 3.1699 0.0000
3 ENSG00000234940 novel transcript 2.8074 0.0000
4 ENSG00000244691 RPL10AP1 ribosomal protein L10a pseudogene 1 2.8074 0.0000
5 ENSG00000137338 PGBD1 piggyBac transposable element derived 1 2.6627 0.0000
6 ENSG00000279123 novel transcript 2.6156 0.0000
7 ENSG00000200597 RNVU1-33 RNA, variant U1 small nuclear 33 2.5850 0.0000
8 ENSG00000206847 Y RNA 2.5850 0.0000
9 ENSG00000223225 RNU6-1054P RNA, U6 small nuclear 1054, pseudogene 2.5850 0.0000
10 ENSG00000227107 novel transcript 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000215196 BASP1-AS1 BASP1 antisense RNA 1 -1.9049 1.0000
63172 ENSG00000120533 ENY2 ENY2 transcription and export complex 2 subunit -1.9039 0.2793
63171 ENSG00000268144 NIFKP6 nucleolar protein interacting with the FHA domain of MKI67 pseudogene 6 -1.9037 1.0000
63170 ENSG00000199366 Y RNA -1.9033 0.4124
63169 ENSG00000141448 GATA6 GATA binding protein 6 -1.9026 0.4857
63168 ENSG00000103540 CCP110 centriolar coiled-coil protein 110 -1.9025 0.2793
63167 ENSG00000267064 UXT-AS1 UXT antisense RNA 1 -1.9023 0.4190
63166 ENSG00000126756 UXT ubiquitously expressed prefoldin like chaperone -1.9023 0.4190
63165 ENSG00000237036 ZEB1-AS1 ZEB1 antisense RNA 1 -1.9023 0.3778
63164 ENSG00000148516 ZEB1 zinc finger E-box binding homeobox 1 -1.9023 0.3778

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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