Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481572

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481572


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7010000000000000000000-769Sequence Read ArchiveSRP074598SRP074598_M45Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeZygoteHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000224106 CYP4F25P cytochrome P450 family 4 subfamily F member 25, pseudogene 3.7004 0.0000
2 ENSG00000203897 SPATA42 spermatogenesis associated 42 3.1699 0.0000
3 ENSG00000234940 novel transcript 2.8074 0.0000
4 ENSG00000244691 RPL10AP1 ribosomal protein L10a pseudogene 1 2.8074 0.0000
5 ENSG00000137338 PGBD1 piggyBac transposable element derived 1 2.6627 0.0000
6 ENSG00000279123 novel transcript 2.6156 0.0000
7 ENSG00000200597 RNVU1-33 RNA, variant U1 small nuclear 33 2.5850 0.0000
8 ENSG00000206847 NA 2.5850 0.0000
9 ENSG00000223225 RNU6-1054P RNA, U6 small nuclear 1054, pseudogene 2.5850 0.0000
10 ENSG00000227107 novel transcript 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63221 ENSG00000213463 SYNJ2BP synaptojanin 2 binding protein -1.9388 0.6569
63220 ENSG00000170486 KRT72 keratin 72 -1.9388 0.2655
63219 ENSG00000226266 novel transcript -1.9388 0.4466
63218 ENSG00000227125 novel transcript -1.9387 1.0000
63217 ENSG00000171772 SYCE1 synaptonemal complex central element protein 1 -1.9361 0.1543
63216 ENSG00000249149 High mobility group nucleosome-binding domain-containing protein family -1.9358 0.0169
63215 ENSG00000164244 PRRC1 proline rich coiled-coil 1 -1.9350 1.0000
63214 ENSG00000257384 inositol polyphosphate-1-phosphatase (INPP1) pseudogene -1.9342 1.0000
63213 ENSG00000275017 developmental pluripotency associated 3 (DPPA3) pseudogene -1.9342 0.0007
63212 ENSG00000139405 RITA1 RBPJ interacting and tubulin associated 1 -1.9311 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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