Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2481572
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481572
Profile download
7010000000000000000000-769
Sequence Read Archive
SRP074598
SRP074598_M45
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Zygote
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000224106
CYP4F25P
cytochrome P450 family 4 subfamily F member 25, pseudogene
3.7004
0.0000
2
ENSG00000203897
SPATA42
spermatogenesis associated 42
3.1699
0.0000
3
ENSG00000234940
novel transcript
2.8074
0.0000
4
ENSG00000244691
RPL10AP1
ribosomal protein L10a pseudogene 1
2.8074
0.0000
5
ENSG00000137338
PGBD1
piggyBac transposable element derived 1
2.6627
0.0000
6
ENSG00000279123
novel transcript
2.6156
0.0000
7
ENSG00000200597
RNVU1-33
RNA, variant U1 small nuclear 33
2.5850
0.0000
8
ENSG00000206847
Y RNA
2.5850
0.0000
9
ENSG00000223225
RNU6-1054P
RNA, U6 small nuclear 1054, pseudogene
2.5850
0.0000
10
ENSG00000227107
novel transcript
2.5850
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63173
ENSG00000215196
BASP1-AS1
BASP1 antisense RNA 1
-1.9049
1.0000
63172
ENSG00000120533
ENY2
ENY2 transcription and export complex 2 subunit
-1.9039
0.2793
63171
ENSG00000268144
NIFKP6
nucleolar protein interacting with the FHA domain of MKI67 pseudogene 6
-1.9037
1.0000
63170
ENSG00000199366
Y RNA
-1.9033
0.4124
63169
ENSG00000141448
GATA6
GATA binding protein 6
-1.9026
0.4857
63168
ENSG00000103540
CCP110
centriolar coiled-coil protein 110
-1.9025
0.2793
63167
ENSG00000267064
UXT-AS1
UXT antisense RNA 1
-1.9023
0.4190
63166
ENSG00000126756
UXT
ubiquitously expressed prefoldin like chaperone
-1.9023
0.4190
63165
ENSG00000237036
ZEB1-AS1
ZEB1 antisense RNA 1
-1.9023
0.3778
63164
ENSG00000148516
ZEB1
zinc finger E-box binding homeobox 1
-1.9023
0.3778
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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