Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481572

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2481572 Profile download	7010000000000000000000-769	Sequence Read Archive	SRP074598	SRP074598_M45	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Zygote	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000224106	CYP4F25P	cytochrome P450 family 4 subfamily F member 25, pseudogene	3.7004	0.0000
2	ENSG00000203897	SPATA42	spermatogenesis associated 42	3.1699	0.0000
3	ENSG00000234940		novel transcript	2.8074	0.0000
4	ENSG00000244691	RPL10AP1	ribosomal protein L10a pseudogene 1	2.8074	0.0000
5	ENSG00000137338	PGBD1	piggyBac transposable element derived 1	2.6627	0.0000
6	ENSG00000279123		novel transcript	2.6156	0.0000
7	ENSG00000200597	RNVU1-33	RNA, variant U1 small nuclear 33	2.5850	0.0000
8	ENSG00000206847		Y RNA	2.5850	0.0000
9	ENSG00000223225	RNU6-1054P	RNA, U6 small nuclear 1054, pseudogene	2.5850	0.0000
10	ENSG00000227107		novel transcript	2.5850	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63173	ENSG00000215196	BASP1-AS1	BASP1 antisense RNA 1	-1.9049	1.0000
63172	ENSG00000120533	ENY2	ENY2 transcription and export complex 2 subunit	-1.9039	0.2793
63171	ENSG00000268144	NIFKP6	nucleolar protein interacting with the FHA domain of MKI67 pseudogene 6	-1.9037	1.0000
63170	ENSG00000199366		Y RNA	-1.9033	0.4124
63169	ENSG00000141448	GATA6	GATA binding protein 6	-1.9026	0.4857
63168	ENSG00000103540	CCP110	centriolar coiled-coil protein 110	-1.9025	0.2793
63167	ENSG00000267064	UXT-AS1	UXT antisense RNA 1	-1.9023	0.4190
63166	ENSG00000126756	UXT	ubiquitously expressed prefoldin like chaperone	-1.9023	0.4190
63165	ENSG00000237036	ZEB1-AS1	ZEB1 antisense RNA 1	-1.9023	0.3778
63164	ENSG00000148516	ZEB1	zinc finger E-box binding homeobox 1	-1.9023	0.3778

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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