Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481572

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2481572 Profile download	7010000000000000000000-769	Sequence Read Archive	SRP074598	SRP074598_M45	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Zygote	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000224106	CYP4F25P	cytochrome P450 family 4 subfamily F member 25, pseudogene	3.7004	0.0000
2	ENSG00000203897	SPATA42	spermatogenesis associated 42	3.1699	0.0000
3	ENSG00000234940		novel transcript	2.8074	0.0000
4	ENSG00000244691	RPL10AP1	ribosomal protein L10a pseudogene 1	2.8074	0.0000
5	ENSG00000137338	PGBD1	piggyBac transposable element derived 1	2.6627	0.0000
6	ENSG00000279123		novel transcript	2.6156	0.0000
7	ENSG00000200597	RNVU1-33	RNA, variant U1 small nuclear 33	2.5850	0.0000
8	ENSG00000206847		NA	2.5850	0.0000
9	ENSG00000223225	RNU6-1054P	RNA, U6 small nuclear 1054, pseudogene	2.5850	0.0000
10	ENSG00000227107		novel transcript	2.5850	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63221	ENSG00000213463	SYNJ2BP	synaptojanin 2 binding protein	-1.9388	0.6569
63220	ENSG00000170486	KRT72	keratin 72	-1.9388	0.2655
63219	ENSG00000226266		novel transcript	-1.9388	0.4466
63218	ENSG00000227125		novel transcript	-1.9387	1.0000
63217	ENSG00000171772	SYCE1	synaptonemal complex central element protein 1	-1.9361	0.1543
63216	ENSG00000249149		High mobility group nucleosome-binding domain-containing protein family	-1.9358	0.0169
63215	ENSG00000164244	PRRC1	proline rich coiled-coil 1	-1.9350	1.0000
63214	ENSG00000257384		inositol polyphosphate-1-phosphatase (INPP1) pseudogene	-1.9342	1.0000
63213	ENSG00000275017		developmental pluripotency associated 3 (DPPA3) pseudogene	-1.9342	0.0007
63212	ENSG00000139405	RITA1	RBPJ interacting and tubulin associated 1	-1.9311	1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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