SHOGoiN Cell Methylome: GSM2481572

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481572


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7010000000000000000000-769Sequence Read ArchiveSRP074598SRP074598_M45Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeZygoteHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000224106 CYP4F25P cytochrome P450 family 4 subfamily F member 25, pseudogene 3.7004 0.0000
2 ENSG00000203897 SPATA42 spermatogenesis associated 42 3.1699 0.0000
3 ENSG00000234940 novel transcript 2.8074 0.0000
4 ENSG00000244691 RPL10AP1 ribosomal protein L10a pseudogene 1 2.8074 0.0000
5 ENSG00000137338 PGBD1 piggyBac transposable element derived 1 2.6627 0.0000
6 ENSG00000279123 novel transcript 2.6156 0.0000
7 ENSG00000200597 RNU1-87P RNA, U1 small nuclear 87, pseudogene 2.5850 0.0000
8 ENSG00000206847 NA 2.5850 0.0000
9 ENSG00000223225 RNU6-1054P RNA, U6 small nuclear 1054, pseudogene 2.5850 0.0000
10 ENSG00000227107 novel transcript 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000158258 CLSTN2 calsyntenin 2 -2.0000 1.0000
63340 ENSG00000155313 USP25 ubiquitin specific peptidase 25 -2.0000 1.0000
63339 ENSG00000155115 GTF3C6 general transcription factor IIIC subunit 6 -2.0000 1.0000
63338 ENSG00000146378 TAAR2 trace amine associated receptor 2 (gene/pseudogene) -2.0000 1.0000
63337 ENSG00000145075 CCDC39 coiled-coil domain containing 39 -2.0000 1.0000
63336 ENSG00000135929 CYP27A1 cytochrome P450 family 27 subfamily A member 1 -2.0000 1.0000
63335 ENSG00000120563 LYZL1 lysozyme like 1 -2.0000 1.0000
63334 ENSG00000115138 POMC proopiomelanocortin -2.0000 0.6274
63333 ENSG00000110002 VWA5A von Willebrand factor A domain containing 5A -2.0000 1.0000
63332 ENSG00000096006 CRISP3 cysteine rich secretory protein 3 -2.0000 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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