Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481573

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481573


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7010000000000000000000-769Sequence Read ArchiveSRP074598SRP074598_M46Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeZygoteHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000180016 OR1E1 olfactory receptor family 1 subfamily E member 1 2.8074 0.0001
2 ENSG00000275002 zinc finger, AN1-type domain 2A (ZFAND2A) pseudogene 2.8074 0.0001
3 ENSG00000226448 RPL7AP51 ribosomal protein L7a pseudogene 51 2.6569 0.0000
4 ENSG00000207309 RNU4-70P RNA, U4 small nuclear 70, pseudogene 2.5850 0.0005
5 ENSG00000213183 RPS7P8 ribosomal protein S7 pseudogene 8 2.5850 0.0005
6 ENSG00000233623 PGAM1P11 phosphoglycerate mutase 1 pseudogene 11 2.5850 0.0005
7 ENSG00000238000 PSME2P1 proteasome activator subunit 2 pseudogene 1 2.5850 0.0005
8 ENSG00000257959 novel transcript, antisense to OR11H12 2.5850 0.0000
9 ENSG00000264424 MYH4 myosin heavy chain 4 2.5850 0.0000
10 ENSG00000213133 PPP1R14BP5 protein phosphatase 1 regulatory inhibitor subunit 14B pseudogene 5 2.5061 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000186960 LINC01551 long intergenic non-protein coding RNA 1551 -1.8185 0.0000
63127 ENSG00000146070 PLA2G7 phospholipase A2 group VII -1.8183 0.0000
63126 ENSG00000255330 novel protein -1.8176 0.0000
63125 ENSG00000131831 RAI2 retinoic acid induced 2 -1.8176 0.0000
63124 ENSG00000213315 ribosomal protein S18 (RPS18) pseudogene -1.8174 0.0000
63123 ENSG00000254777 novel transcript -1.8173 0.0000
63122 ENSG00000176396 EID2 EP300 interacting inhibitor of differentiation 2 -1.8170 0.0000
63121 ENSG00000243510 RN7SL111P RNA, 7SL, cytoplasmic 111, pseudogene -1.8168 0.0000
63120 ENSG00000168795 ZBTB5 zinc finger and BTB domain containing 5 -1.8165 0.0000
63119 ENSG00000230015 novel transcript -1.8161 0.0002

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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