SHOGoiN Cell Methylome: GSM2481573

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481573


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7010000000000000000000-769Sequence Read ArchiveSRP074598SRP074598_M46Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeZygoteHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000180016 OR1E1 olfactory receptor family 1 subfamily E member 1 2.8074 0.0001
2 ENSG00000275002 zinc finger, AN1-type domain 2A (ZFAND2A) pseudogene 2.8074 0.0001
3 ENSG00000226448 RPL7AP51 ribosomal protein L7a pseudogene 51 2.6569 0.0000
4 ENSG00000207309 RNU4-70P RNA, U4 small nuclear 70, pseudogene 2.5850 0.0005
5 ENSG00000213183 RPS7P8 ribosomal protein S7 pseudogene 8 2.5850 0.0005
6 ENSG00000233623 PGAM1P11 phosphoglycerate mutase 1 pseudogene 11 2.5850 0.0005
7 ENSG00000238000 proteasome (prosome, macropain) activator subunit 2 (PA28 beta) (PSME2) pseudogene 2.5850 0.0005
8 ENSG00000257959 novel transcript, antisense to OR11H12 2.5850 0.0000
9 ENSG00000264424 MYH4 myosin heavy chain 4 2.5850 0.0000
10 ENSG00000213133 PPP1R14BP5 protein phosphatase 1 regulatory inhibitor subunit 14B pseudogene 5 2.5061 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000253256 novel transcript -1.9011 0.0000
63340 ENSG00000265545 transcription elongation factor B (SIII), polypeptide 1 (15kDa, elongin C) (TCEB1) pseudogene -1.9011 0.0000
63339 ENSG00000213435 ATP6V0CP3 ATPase H+ transporting V0 subunit c pseudogene 3 -1.9008 0.0124
63338 ENSG00000233887 endogenous retroviral family W, env(C7), member 2 -1.9006 0.0000
63337 ENSG00000175175 PPM1E protein phosphatase, Mg2+/Mn2+ dependent 1E -1.9004 0.0000
63336 ENSG00000227640 SOX21-AS1 SOX21 antisense divergent transcript 1 -1.8998 0.0000
63335 ENSG00000241505 novel transcript -1.8997 0.0000
63334 ENSG00000237457 LINC01351 long intergenic non-protein coding RNA 1351 -1.8997 0.0000
63333 ENSG00000261934 PCDHGA9 protocadherin gamma subfamily A, 9 -1.8995 0.0000
63332 ENSG00000265946 SRSF protein kinase 1 (SRPK1) pseudogene -1.8993 0.0183

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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