Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481574

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2481574 Profile download	7010000000000000000000-769	Sequence Read Archive	SRP074598	SRP074598_M47	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Zygote	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000118181	RPS25	ribosomal protein S25	2.5850	0.0000
2	ENSG00000196655	TRAPPC4	trafficking protein particle complex 4	2.5850	0.0000
3	ENSG00000221697	MIR1275	microRNA 1275	2.5850	0.0000
4	ENSG00000222032		novel protein (LOC728009)	2.5850	0.0000
5	ENSG00000255839		novel transcript	2.5850	0.0000
6	ENSG00000283704		NA	2.5850	0.0000
7	ENSG00000254705		novel transcript	2.4534	0.0000
8	ENSG00000104361	NIPAL2	NIPA like domain containing 2	2.3219	0.0000
9	ENSG00000115363	EVA1A	eva-1 homolog A, regulator of programmed cell death	2.3219	0.0000
10	ENSG00000199572	RNA5SP174	RNA, 5S ribosomal pseudogene 174	2.3219	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000230835		ribosomal protein S16 (RPS16) pseudogene	-1.5887	1.0000
63127	ENSG00000265393		novel transcript, antisense to RECQL4	-1.5886	0.0669
63126	ENSG00000276698		novel transcript	-1.5876	0.1938
63125	ENSG00000125812	GZF1	GDNF inducible zinc finger protein 1	-1.5875	0.4466
63124	ENSG00000229508	PHKG1P4	phosphorylase kinase catalytic subunit gamma 1 pseudogene 4	-1.5875	0.0417
63123	ENSG00000237863		novel transcript, antisense to IRS4	-1.5873	0.7683
63122	ENSG00000133124	IRS4	insulin receptor substrate 4	-1.5873	0.7683
63121	ENSG00000283959		novel transcript	-1.5868	0.4244
63120	ENSG00000284427	MIR4647	microRNA 4647	-1.5850	1.0000
63119	ENSG00000283587		gap junction beta family pseudogene	-1.5850	1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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