Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481574

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481574


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7010000000000000000000-769Sequence Read ArchiveSRP074598SRP074598_M47Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeZygoteHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000118181 RPS25 ribosomal protein S25 2.5850 0.0000
2 ENSG00000196655 TRAPPC4 trafficking protein particle complex 4 2.5850 0.0000
3 ENSG00000221697 MIR1275 microRNA 1275 2.5850 0.0000
4 ENSG00000222032 novel protein (LOC728009) 2.5850 0.0000
5 ENSG00000255839 novel transcript 2.5850 0.0000
6 ENSG00000283704 NA 2.5850 0.0000
7 ENSG00000254705 novel transcript 2.4534 0.0000
8 ENSG00000104361 NIPAL2 NIPA like domain containing 2 2.3219 0.0000
9 ENSG00000115363 EVA1A eva-1 homolog A, regulator of programmed cell death 2.3219 0.0000
10 ENSG00000199572 RNA5SP174 RNA, 5S ribosomal pseudogene 174 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000230835 ribosomal protein S16 (RPS16) pseudogene -1.5887 1.0000
63127 ENSG00000265393 novel transcript, antisense to RECQL4 -1.5886 0.0669
63126 ENSG00000276698 novel transcript -1.5876 0.1938
63125 ENSG00000125812 GZF1 GDNF inducible zinc finger protein 1 -1.5875 0.4466
63124 ENSG00000229508 PHKG1P4 phosphorylase kinase catalytic subunit gamma 1 pseudogene 4 -1.5875 0.0417
63123 ENSG00000237863 novel transcript, antisense to IRS4 -1.5873 0.7683
63122 ENSG00000133124 IRS4 insulin receptor substrate 4 -1.5873 0.7683
63121 ENSG00000283959 novel transcript -1.5868 0.4244
63120 ENSG00000284427 MIR4647 microRNA 4647 -1.5850 1.0000
63119 ENSG00000283587 gap junction beta family pseudogene -1.5850 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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