SHOGoiN Cell Methylome: GSM2481574

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481574


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7010000000000000000000-769Sequence Read ArchiveSRP074598SRP074598_M47Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeZygoteHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000118181 RPS25 ribosomal protein S25 2.5850 0.0000
2 ENSG00000196655 TRAPPC4 trafficking protein particle complex 4 2.5850 0.0000
3 ENSG00000221697 MIR1275 microRNA 1275 2.5850 0.0000
4 ENSG00000222032 novel protein (LOC728009) 2.5850 0.0000
5 ENSG00000255839 novel transcript 2.5850 0.0000
6 ENSG00000283704 NA 2.5850 0.0000
7 ENSG00000254705 novel transcript 2.4534 0.0000
8 ENSG00000104361 NIPAL2 NIPA like domain containing 2 2.3219 0.0000
9 ENSG00000115363 EVA1A eva-1 homolog A, regulator of programmed cell death 2.3219 0.0000
10 ENSG00000199572 RNA5SP174 RNA, 5S ribosomal pseudogene 174 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000144036 EXOC6B exocyst complex component 6B -1.6890 1.0000
63340 ENSG00000276704 novel transcript, sense intronic to RAP2A -1.6888 0.5027
63339 ENSG00000276573 novel transcript, sense intronic to RAP2A -1.6888 0.5027
63338 ENSG00000241997 RN7SL323P RNA, 7SL, cytoplasmic 323, pseudogene -1.6887 1.0000
63337 ENSG00000153250 RBMS1 RNA binding motif single stranded interacting protein 1 -1.6885 1.0000
63336 ENSG00000264359 NEK4P2 NIMA-related kinase 4 pseudogene 2 -1.6872 0.2561
63335 ENSG00000262304 novel readthrough SHPK-TRPV1 protein -1.6871 0.7729
63334 ENSG00000225313 novel transcript -1.6846 1.0000
63333 ENSG00000107105 ELAVL2 ELAV like RNA binding protein 2 -1.6845 0.5314
63332 ENSG00000273062 novel transcript, antisense to RALGPS2 -1.6839 0.7265

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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