SHOGoiN Cell Methylome: GSM2481574
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481574 Profile download | 7010000000000000000000-769 | Sequence Read Archive | SRP074598 | SRP074598_M47 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Zygote | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000118181 | RPS25 | ribosomal protein S25 | 2.5850 | 0.0000 |
| 2 | ENSG00000196655 | TRAPPC4 | trafficking protein particle complex 4 | 2.5850 | 0.0000 |
| 3 | ENSG00000221697 | MIR1275 | microRNA 1275 | 2.5850 | 0.0000 |
| 4 | ENSG00000222032 | novel protein (LOC728009) | 2.5850 | 0.0000 | |
| 5 | ENSG00000255839 | novel transcript | 2.5850 | 0.0000 | |
| 6 | ENSG00000283704 | NA | 2.5850 | 0.0000 | |
| 7 | ENSG00000254705 | novel transcript | 2.4534 | 0.0000 | |
| 8 | ENSG00000104361 | NIPAL2 | NIPA like domain containing 2 | 2.3219 | 0.0000 |
| 9 | ENSG00000115363 | EVA1A | eva-1 homolog A, regulator of programmed cell death | 2.3219 | 0.0000 |
| 10 | ENSG00000199572 | RNA5SP174 | RNA, 5S ribosomal pseudogene 174 | 2.3219 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000144036 | EXOC6B | exocyst complex component 6B | -1.6890 | 1.0000 |
| 63340 | ENSG00000276704 | novel transcript, sense intronic to RAP2A | -1.6888 | 0.5027 | |
| 63339 | ENSG00000276573 | novel transcript, sense intronic to RAP2A | -1.6888 | 0.5027 | |
| 63338 | ENSG00000241997 | RN7SL323P | RNA, 7SL, cytoplasmic 323, pseudogene | -1.6887 | 1.0000 |
| 63337 | ENSG00000153250 | RBMS1 | RNA binding motif single stranded interacting protein 1 | -1.6885 | 1.0000 |
| 63336 | ENSG00000264359 | NEK4P2 | NIMA-related kinase 4 pseudogene 2 | -1.6872 | 0.2561 |
| 63335 | ENSG00000262304 | novel readthrough SHPK-TRPV1 protein | -1.6871 | 0.7729 | |
| 63334 | ENSG00000225313 | novel transcript | -1.6846 | 1.0000 | |
| 63333 | ENSG00000107105 | ELAVL2 | ELAV like RNA binding protein 2 | -1.6845 | 0.5314 |
| 63332 | ENSG00000273062 | novel transcript, antisense to RALGPS2 | -1.6839 | 0.7265 |
