Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
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SHOGoiN Cell Methylome: GSM2481574
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481574
Profile download
7010000000000000000000-769
Sequence Read Archive
SRP074598
SRP074598_M47
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Zygote
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000118181
RPS25
ribosomal protein S25
2.5850
0.0000
2
ENSG00000196655
TRAPPC4
trafficking protein particle complex 4
2.5850
0.0000
3
ENSG00000221697
MIR1275
microRNA 1275
2.5850
0.0000
4
ENSG00000222032
novel protein (LOC728009)
2.5850
0.0000
5
ENSG00000255839
novel transcript
2.5850
0.0000
6
ENSG00000283704
NA
2.5850
0.0000
7
ENSG00000254705
novel transcript
2.4534
0.0000
8
ENSG00000104361
NIPAL2
NIPA like domain containing 2
2.3219
0.0000
9
ENSG00000115363
EVA1A
eva-1 homolog A, regulator of programmed cell death
2.3219
0.0000
10
ENSG00000199572
RNA5SP174
RNA, 5S ribosomal pseudogene 174
2.3219
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000230835
ribosomal protein S16 (RPS16) pseudogene
-1.5887
1.0000
63127
ENSG00000265393
novel transcript, antisense to RECQL4
-1.5886
0.0669
63126
ENSG00000276698
novel transcript
-1.5876
0.1938
63125
ENSG00000125812
GZF1
GDNF inducible zinc finger protein 1
-1.5875
0.4466
63124
ENSG00000229508
PHKG1P4
phosphorylase kinase catalytic subunit gamma 1 pseudogene 4
-1.5875
0.0417
63123
ENSG00000237863
novel transcript, antisense to IRS4
-1.5873
0.7683
63122
ENSG00000133124
IRS4
insulin receptor substrate 4
-1.5873
0.7683
63121
ENSG00000283959
novel transcript
-1.5868
0.4244
63120
ENSG00000284427
MIR4647
microRNA 4647
-1.5850
1.0000
63119
ENSG00000283587
gap junction beta family pseudogene
-1.5850
1.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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