Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481575

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481575


Profile download
7010000000000000000000-769Sequence Read ArchiveSRP074598SRP074598_M48Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeZygoteHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000100749 VRK1 VRK serine/threonine kinase 1 4.1699 0.0000
2 ENSG00000220131 ribosomal protein S14 (RPS14) pseudogene 3.2378 0.0000
3 ENSG00000279670 TEC 3.1699 0.0000
4 ENSG00000224776 RPSAP50 ribosomal protein SA pseudogene 50 3.1334 0.0000
5 ENSG00000270423 retinoblastoma binding protein 8, pseudogene 3.1334 0.0000
6 ENSG00000171180 OR2M4 olfactory receptor family 2 subfamily M member 4 3.0000 0.0000
7 ENSG00000207384 Y RNA 3.0000 0.0000
8 ENSG00000239473 RPL7P38 ribosomal protein L7 pseudogene 38 3.0000 0.0000
9 ENSG00000283532 MIR4317 microRNA 4317 3.0000 0.0000
10 ENSG00000268469 BNIP3P38 BCL2 interacting protein 3 pseudogene 38 2.9584 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000118418 HMGN3 high mobility group nucleosomal binding domain 3 -2.3085 0.0000
63127 ENSG00000189229 novel transcript -2.3076 0.2118
63126 ENSG00000217889 KRT18P48 keratin 18 pseudogene 48 -2.3072 0.0000
63125 ENSG00000179546 HTR1D 5-hydroxytryptamine receptor 1D -2.3056 0.0000
63124 ENSG00000243374 RN7SL72P RNA, 7SL, cytoplasmic 72, pseudogene -2.3050 0.0000
63123 ENSG00000261270 novel transcript, sense intronic to HERPUD1 -2.3049 0.0000
63122 ENSG00000182896 TMEM95 transmembrane protein 95 -2.3032 0.0000
63121 ENSG00000255855 KDM4F lysine demethylase 4F -2.3028 0.0016
63120 ENSG00000273300 novel transcript, antisense to UFD1L -2.3026 0.0000
63119 ENSG00000280367 novel transcript -2.3018 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...