Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM2481575
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481575
Profile download
7010000000000000000000-769
Sequence Read Archive
SRP074598
SRP074598_M48
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Zygote
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000100749
VRK1
VRK serine/threonine kinase 1
4.1699
0.0000
2
ENSG00000220131
ribosomal protein S14 (RPS14) pseudogene
3.2378
0.0000
3
ENSG00000279670
TEC
3.1699
0.0000
4
ENSG00000224776
RPSAP50
ribosomal protein SA pseudogene 50
3.1334
0.0000
5
ENSG00000270423
retinoblastoma binding protein 8, pseudogene
3.1334
0.0000
6
ENSG00000171180
OR2M4
olfactory receptor family 2 subfamily M member 4
3.0000
0.0000
7
ENSG00000207384
Y RNA
3.0000
0.0000
8
ENSG00000239473
RPL7P38
ribosomal protein L7 pseudogene 38
3.0000
0.0000
9
ENSG00000283532
MIR4317
microRNA 4317
3.0000
0.0000
10
ENSG00000268469
BNIP3P38
BCL2 interacting protein 3 pseudogene 38
2.9584
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000118418
HMGN3
high mobility group nucleosomal binding domain 3
-2.3085
0.0000
63127
ENSG00000189229
novel transcript
-2.3076
0.2118
63126
ENSG00000217889
KRT18P48
keratin 18 pseudogene 48
-2.3072
0.0000
63125
ENSG00000179546
HTR1D
5-hydroxytryptamine receptor 1D
-2.3056
0.0000
63124
ENSG00000243374
RN7SL72P
RNA, 7SL, cytoplasmic 72, pseudogene
-2.3050
0.0000
63123
ENSG00000261270
novel transcript, sense intronic to HERPUD1
-2.3049
0.0000
63122
ENSG00000182896
TMEM95
transmembrane protein 95
-2.3032
0.0000
63121
ENSG00000255855
KDM4F
lysine demethylase 4F
-2.3028
0.0016
63120
ENSG00000273300
novel transcript, antisense to UFD1L
-2.3026
0.0000
63119
ENSG00000280367
novel transcript
-2.3018
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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