SHOGoiN Cell Methylome: GSM2481575

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481575


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7010000000000000000000-769Sequence Read ArchiveSRP074598SRP074598_M48Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeZygoteHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000100749 VRK1 VRK serine/threonine kinase 1 4.1699 0.0000
2 ENSG00000220131 ribosomal protein S14 (RPS14) pseudogene 3.2378 0.0000
3 ENSG00000279670 TEC 3.1699 0.0000
4 ENSG00000224776 RPSAP50 ribosomal protein SA pseudogene 50 3.1334 0.0000
5 ENSG00000270423 retinoblastoma binding protein 8, pseudogene 3.1334 0.0000
6 ENSG00000171180 OR2M4 olfactory receptor family 2 subfamily M member 4 3.0000 0.0000
7 ENSG00000207384 NA 3.0000 0.0000
8 ENSG00000239473 RPL7P38 ribosomal protein L7 pseudogene 38 3.0000 0.0000
9 ENSG00000283532 MIR4317 microRNA 4317 3.0000 0.0000
10 ENSG00000268469 BNIP3P38 BCL2 interacting protein 3 pseudogene 38 2.9584 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000273363 novel transcript -2.3851 0.0002
63340 ENSG00000270763 DDX43P2 DEAD-box helicase 43 pseudogene 2 -2.3850 0.0235
63339 ENSG00000161180 CCDC116 coiled-coil domain containing 116 -2.3835 0.0000
63338 ENSG00000196224 KRTAP5-3 keratin associated protein 5-3 -2.3834 0.0000
63337 ENSG00000187715 KBTBD12 kelch repeat and BTB domain containing 12 -2.3826 0.0000
63336 ENSG00000235636 NUS1P1 NUS1 pseudogene 1 -2.3822 0.0000
63335 ENSG00000233751 related RAS viral (r-ras) oncogene homolog 2 (RRAS2) pseudogene -2.3813 0.0000
63334 ENSG00000168283 BMI1 BMI1 proto-oncogene, polycomb ring finger -2.3777 0.0000
63333 ENSG00000248367 novel transcript -2.3771 0.0000
63332 ENSG00000075073 TACR2 tachykinin receptor 2 -2.3769 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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