Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481575

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2481575 Profile download	7010000000000000000000-769	Sequence Read Archive	SRP074598	SRP074598_M48	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Zygote	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000100749	VRK1	VRK serine/threonine kinase 1	4.1699	0.0000
2	ENSG00000220131		ribosomal protein S14 (RPS14) pseudogene	3.2378	0.0000
3	ENSG00000279670		TEC	3.1699	0.0000
4	ENSG00000224776	RPSAP50	ribosomal protein SA pseudogene 50	3.1334	0.0000
5	ENSG00000270423		retinoblastoma binding protein 8, pseudogene	3.1334	0.0000
6	ENSG00000171180	OR2M4	olfactory receptor family 2 subfamily M member 4	3.0000	0.0000
7	ENSG00000207384		Y RNA	3.0000	0.0000
8	ENSG00000239473	RPL7P38	ribosomal protein L7 pseudogene 38	3.0000	0.0000
9	ENSG00000283532	MIR4317	microRNA 4317	3.0000	0.0000
10	ENSG00000268469	BNIP3P38	BCL2 interacting protein 3 pseudogene 38	2.9584	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000118418	HMGN3	high mobility group nucleosomal binding domain 3	-2.3085	0.0000
63127	ENSG00000189229		novel transcript	-2.3076	0.2118
63126	ENSG00000217889	KRT18P48	keratin 18 pseudogene 48	-2.3072	0.0000
63125	ENSG00000179546	HTR1D	5-hydroxytryptamine receptor 1D	-2.3056	0.0000
63124	ENSG00000243374	RN7SL72P	RNA, 7SL, cytoplasmic 72, pseudogene	-2.3050	0.0000
63123	ENSG00000261270		novel transcript, sense intronic to HERPUD1	-2.3049	0.0000
63122	ENSG00000182896	TMEM95	transmembrane protein 95	-2.3032	0.0000
63121	ENSG00000255855	KDM4F	lysine demethylase 4F	-2.3028	0.0016
63120	ENSG00000273300		novel transcript, antisense to UFD1L	-2.3026	0.0000
63119	ENSG00000280367		novel transcript	-2.3018	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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