SHOGoiN Cell Methylome: GSM2481575
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481575 Profile download | 7010000000000000000000-769 | Sequence Read Archive | SRP074598 | SRP074598_M48 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Zygote | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000100749 | VRK1 | VRK serine/threonine kinase 1 | 4.1699 | 0.0000 |
| 2 | ENSG00000220131 | ribosomal protein S14 (RPS14) pseudogene | 3.2378 | 0.0000 | |
| 3 | ENSG00000279670 | TEC | 3.1699 | 0.0000 | |
| 4 | ENSG00000224776 | RPSAP50 | ribosomal protein SA pseudogene 50 | 3.1334 | 0.0000 |
| 5 | ENSG00000270423 | retinoblastoma binding protein 8, pseudogene | 3.1334 | 0.0000 | |
| 6 | ENSG00000171180 | OR2M4 | olfactory receptor family 2 subfamily M member 4 | 3.0000 | 0.0000 |
| 7 | ENSG00000207384 | NA | 3.0000 | 0.0000 | |
| 8 | ENSG00000239473 | RPL7P38 | ribosomal protein L7 pseudogene 38 | 3.0000 | 0.0000 |
| 9 | ENSG00000283532 | MIR4317 | microRNA 4317 | 3.0000 | 0.0000 |
| 10 | ENSG00000268469 | BNIP3P38 | BCL2 interacting protein 3 pseudogene 38 | 2.9584 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000273363 | novel transcript | -2.3851 | 0.0002 | |
| 63340 | ENSG00000270763 | DDX43P2 | DEAD-box helicase 43 pseudogene 2 | -2.3850 | 0.0235 |
| 63339 | ENSG00000161180 | CCDC116 | coiled-coil domain containing 116 | -2.3835 | 0.0000 |
| 63338 | ENSG00000196224 | KRTAP5-3 | keratin associated protein 5-3 | -2.3834 | 0.0000 |
| 63337 | ENSG00000187715 | KBTBD12 | kelch repeat and BTB domain containing 12 | -2.3826 | 0.0000 |
| 63336 | ENSG00000235636 | NUS1P1 | NUS1 pseudogene 1 | -2.3822 | 0.0000 |
| 63335 | ENSG00000233751 | related RAS viral (r-ras) oncogene homolog 2 (RRAS2) pseudogene | -2.3813 | 0.0000 | |
| 63334 | ENSG00000168283 | BMI1 | BMI1 proto-oncogene, polycomb ring finger | -2.3777 | 0.0000 |
| 63333 | ENSG00000248367 | novel transcript | -2.3771 | 0.0000 | |
| 63332 | ENSG00000075073 | TACR2 | tachykinin receptor 2 | -2.3769 | 0.0000 |
