SHOGoiN Cell Methylome: GSM2481576

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481576


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7010000000000000000000-769Sequence Read ArchiveSRP074598SRP074598_M49Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeZygoteHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000249861 LGALS16 galectin 16 2.8074 0.0000
2 ENSG00000133131 MORC4 MORC family CW-type zinc finger 4 2.5850 0.0000
3 ENSG00000212604 NA 2.5850 0.0000
5 ENSG00000259627 novel transcript, antisense to TPM1 2.5850 0.0000
6 ENSG00000041802 LSG1 large 60S subunit nuclear export GTPase 1 2.3219 0.0000
7 ENSG00000092531 SNAP23 synaptosome associated protein 23 2.3219 0.0000
8 ENSG00000118094 TREH trehalase 2.3219 0.0000
9 ENSG00000135318 NT5E 5'-nucleotidase ecto 2.3219 0.0000
10 ENSG00000163032 VSNL1 visinin like 1 2.3219 0.0000
63332 ENSG00000200427 NA -1.7925 1.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000206725 RNU6-1027P RNA, U6 small nuclear 1027, pseudogene -1.7946 0.3809
63340 ENSG00000178093 TSSK6 testis specific serine kinase 6 -1.7942 0.0021
63339 ENSG00000166710 B2M beta-2-microglobulin -1.7938 1.0000
63338 ENSG00000137038 DMAC1 distal membrane arm assembly complex 1 -1.7932 0.0913
63337 ENSG00000184270 HIST2H2AB histone cluster 2 H2A family member b -1.7930 0.5912
63336 ENSG00000184260 HIST2H2AC histone cluster 2 H2A family member c -1.7930 0.5912
63335 ENSG00000233068 novel transcript -1.7925 1.0000
63334 ENSG00000230523 LINC01756 long intergenic non-protein coding RNA 1756 -1.7925 1.0000
63333 ENSG00000228968 novel transcript -1.7925 1.0000
63332 ENSG00000200427 NA -1.7925 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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