Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481576

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481576


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7010000000000000000000-769Sequence Read ArchiveSRP074598SRP074598_M49Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeZygoteHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000249861 LGALS16 galectin 16 2.8074 0.0000
2 ENSG00000133131 MORC4 MORC family CW-type zinc finger 4 2.5850 0.0000
3 ENSG00000212604 NA 2.5850 0.0000
5 ENSG00000259627 novel transcript, antisense to TPM1 2.5850 0.0000
6 ENSG00000041802 LSG1 large 60S subunit nuclear export GTPase 1 2.3219 0.0000
7 ENSG00000092531 SNAP23 synaptosome associated protein 23 2.3219 0.0000
8 ENSG00000118094 TREH trehalase 2.3219 0.0000
9 ENSG00000135318 NT5E 5'-nucleotidase ecto 2.3219 0.0000
10 ENSG00000163032 VSNL1 visinin like 1 2.3219 0.0000
63119 ENSG00000117877 POLR1G RNA polymerase I subunit G -1.6833 0.1271

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000037637 FBXO42 F-box protein 42 -1.6871 1.0000
63127 ENSG00000232891 novel transcript -1.6864 0.1218
63126 ENSG00000271367 novel transcript -1.6857 0.1356
63125 ENSG00000219863 RPL31P28 ribosomal protein L31 pseudogene 28 -1.6857 0.1356
63124 ENSG00000167797 CDK2AP2 cyclin dependent kinase 2 associated protein 2 -1.6852 0.6195
63123 ENSG00000228594 FNDC10 fibronectin type III domain containing 10 -1.6852 0.0849
63122 ENSG00000171813 PWWP2B PWWP domain containing 2B -1.6852 0.0166
63121 ENSG00000161610 HCRT hypocretin neuropeptide precursor -1.6849 0.3059
63120 ENSG00000283414 U6 spliceosomal RNA -1.6845 1.0000
63119 ENSG00000117877 POLR1G RNA polymerase I subunit G -1.6833 0.1271

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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