SHOGoiN Cell Methylome: GSM2481577
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481577 Profile download | 7010000000000000000000-769 | Sequence Read Archive | SRP074598 | SRP074598_M50 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Zygote | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000213370 | RANP6 | RAN pseudogene 6 | 3.9285 | 0.0000 |
| 2 | ENSG00000229570 | GAPDHP58 | glyceraldehyde 3 phosphate dehydrogenase pseudogene 58 | 3.4594 | 0.0000 |
| 3 | ENSG00000265442 | MIR3941 | microRNA 3941 | 3.4594 | 0.0000 |
| 4 | ENSG00000275426 | novel transcript | 3.4594 | 0.0000 | |
| 5 | ENSG00000134200 | TSHB | thyroid stimulating hormone beta | 3.3900 | 0.0000 |
| 6 | ENSG00000240553 | novel transcript | 3.3219 | 0.0000 | |
| 7 | ENSG00000218730 | A kinase (PRKA) interacting protein 1 (AKIP1) pseudogene | 3.2459 | 0.0000 | |
| 8 | ENSG00000175509 | acrosin (ACR) pseudogene | 3.2210 | 0.0000 | |
| 9 | ENSG00000233479 | novel transcript | 3.2210 | 0.0000 | |
| 10 | ENSG00000227014 | novel transcript | 3.2190 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000052126 | PLEKHA5 | pleckstrin homology domain containing A5 | -2.4530 | 0.0000 |
| 63340 | ENSG00000147853 | AK3 | adenylate kinase 3 | -2.4530 | 0.0000 |
| 63339 | ENSG00000197451 | HNRNPAB | heterogeneous nuclear ribonucleoprotein A/B | -2.4527 | 0.0000 |
| 63338 | ENSG00000163499 | CRYBA2 | crystallin beta A2 | -2.4527 | 0.0000 |
| 63337 | ENSG00000165879 | FRAT1 | FRAT regulator of WNT signaling pathway 1 | -2.4519 | 0.0000 |
| 63336 | ENSG00000186767 | SPIN4 | spindlin family member 4 | -2.4510 | 0.0000 |
| 63335 | ENSG00000111276 | CDKN1B | cyclin dependent kinase inhibitor 1B | -2.4508 | 0.0000 |
| 63334 | ENSG00000162545 | CAMK2N1 | calcium/calmodulin dependent protein kinase II inhibitor 1 | -2.4504 | 0.0000 |
| 63333 | ENSG00000149313 | AASDHPPT | aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase | -2.4502 | 0.0000 |
| 63332 | ENSG00000180667 | YOD1 | YOD1 deubiquitinase | -2.4500 | 0.0000 |
