Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481577

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481577


Profile download
7010000000000000000000-769Sequence Read ArchiveSRP074598SRP074598_M50Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeZygoteHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000213370 RANP6 RAN pseudogene 6 3.9285 0.0000
2 ENSG00000229570 GAPDHP58 glyceraldehyde 3 phosphate dehydrogenase pseudogene 58 3.4594 0.0000
3 ENSG00000265442 MIR3941 microRNA 3941 3.4594 0.0000
4 ENSG00000275426 novel transcript 3.4594 0.0000
5 ENSG00000134200 TSHB thyroid stimulating hormone subunit beta 3.3900 0.0000
6 ENSG00000240553 novel transcript 3.3219 0.0000
7 ENSG00000218730 A kinase (PRKA) interacting protein 1 (AKIP1) pseudogene 3.2459 0.0000
8 ENSG00000175509 ACRP1 ACR pseudogene 1 3.2210 0.0000
9 ENSG00000233479 novel transcript 3.2210 0.0000
10 ENSG00000227014 FKBP14-AS1 FKBP14 antisense RNA 1 3.2190 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000278048 U2 spliceosomal RNA -2.3343 0.0000
63127 ENSG00000138182 KIF20B kinesin family member 20B -2.3339 0.0000
63126 ENSG00000207032 Y RNA -2.3338 0.0000
63125 ENSG00000206811 SNORA10 small nucleolar RNA, H/ACA box 10 -2.3337 0.0000
63124 ENSG00000143315 PIGM phosphatidylinositol glycan anchor biosynthesis class M -2.3312 0.0000
63123 ENSG00000131127 ZNF141 zinc finger protein 141 -2.3308 0.0000
63122 ENSG00000256937 KRT17P8 keratin 17 pseudogene 8 -2.3297 0.0000
63121 ENSG00000260619 novel transcript -2.3290 0.0000
63120 ENSG00000280353 TEC -2.3286 0.0000
63119 ENSG00000255330 novel protein -2.3278 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...