Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2481577
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481577
Profile download
7010000000000000000000-769
Sequence Read Archive
SRP074598
SRP074598_M50
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Zygote
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000213370
RANP6
RAN pseudogene 6
3.9285
0.0000
2
ENSG00000229570
GAPDHP58
glyceraldehyde 3 phosphate dehydrogenase pseudogene 58
3.4594
0.0000
3
ENSG00000265442
MIR3941
microRNA 3941
3.4594
0.0000
4
ENSG00000275426
novel transcript
3.4594
0.0000
5
ENSG00000134200
TSHB
thyroid stimulating hormone subunit beta
3.3900
0.0000
6
ENSG00000240553
novel transcript
3.3219
0.0000
7
ENSG00000218730
A kinase (PRKA) interacting protein 1 (AKIP1) pseudogene
3.2459
0.0000
8
ENSG00000175509
ACRP1
ACR pseudogene 1
3.2210
0.0000
9
ENSG00000233479
novel transcript
3.2210
0.0000
10
ENSG00000227014
FKBP14-AS1
FKBP14 antisense RNA 1
3.2190
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000278048
U2 spliceosomal RNA
-2.3343
0.0000
63127
ENSG00000138182
KIF20B
kinesin family member 20B
-2.3339
0.0000
63126
ENSG00000207032
Y RNA
-2.3338
0.0000
63125
ENSG00000206811
SNORA10
small nucleolar RNA, H/ACA box 10
-2.3337
0.0000
63124
ENSG00000143315
PIGM
phosphatidylinositol glycan anchor biosynthesis class M
-2.3312
0.0000
63123
ENSG00000131127
ZNF141
zinc finger protein 141
-2.3308
0.0000
63122
ENSG00000256937
KRT17P8
keratin 17 pseudogene 8
-2.3297
0.0000
63121
ENSG00000260619
novel transcript
-2.3290
0.0000
63120
ENSG00000280353
TEC
-2.3286
0.0000
63119
ENSG00000255330
novel protein
-2.3278
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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