Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481577

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2481577 Profile download	7010000000000000000000-769	Sequence Read Archive	SRP074598	SRP074598_M50	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Zygote	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000213370	RANP6	RAN pseudogene 6	3.9285	0.0000
2	ENSG00000229570	GAPDHP58	glyceraldehyde 3 phosphate dehydrogenase pseudogene 58	3.4594	0.0000
3	ENSG00000265442	MIR3941	microRNA 3941	3.4594	0.0000
4	ENSG00000275426		novel transcript	3.4594	0.0000
5	ENSG00000134200	TSHB	thyroid stimulating hormone subunit beta	3.3900	0.0000
6	ENSG00000240553		novel transcript	3.3219	0.0000
7	ENSG00000218730		A kinase (PRKA) interacting protein 1 (AKIP1) pseudogene	3.2459	0.0000
8	ENSG00000175509	ACRP1	ACR pseudogene 1	3.2210	0.0000
9	ENSG00000233479		novel transcript	3.2210	0.0000
10	ENSG00000227014	FKBP14-AS1	FKBP14 antisense RNA 1	3.2190	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000278048		U2 spliceosomal RNA	-2.3343	0.0000
63127	ENSG00000138182	KIF20B	kinesin family member 20B	-2.3339	0.0000
63126	ENSG00000207032		Y RNA	-2.3338	0.0000
63125	ENSG00000206811	SNORA10	small nucleolar RNA, H/ACA box 10	-2.3337	0.0000
63124	ENSG00000143315	PIGM	phosphatidylinositol glycan anchor biosynthesis class M	-2.3312	0.0000
63123	ENSG00000131127	ZNF141	zinc finger protein 141	-2.3308	0.0000
63122	ENSG00000256937	KRT17P8	keratin 17 pseudogene 8	-2.3297	0.0000
63121	ENSG00000260619		novel transcript	-2.3290	0.0000
63120	ENSG00000280353		TEC	-2.3286	0.0000
63119	ENSG00000255330		novel protein	-2.3278	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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