SHOGoiN Cell Methylome: GSM2481577

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481577


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7010000000000000000000-769Sequence Read ArchiveSRP074598SRP074598_M50Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeZygoteHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000213370 RANP6 RAN pseudogene 6 3.9285 0.0000
2 ENSG00000229570 GAPDHP58 glyceraldehyde 3 phosphate dehydrogenase pseudogene 58 3.4594 0.0000
3 ENSG00000265442 MIR3941 microRNA 3941 3.4594 0.0000
4 ENSG00000275426 novel transcript 3.4594 0.0000
5 ENSG00000134200 TSHB thyroid stimulating hormone beta 3.3900 0.0000
6 ENSG00000240553 novel transcript 3.3219 0.0000
7 ENSG00000218730 A kinase (PRKA) interacting protein 1 (AKIP1) pseudogene 3.2459 0.0000
8 ENSG00000175509 acrosin (ACR) pseudogene 3.2210 0.0000
9 ENSG00000233479 novel transcript 3.2210 0.0000
10 ENSG00000227014 novel transcript 3.2190 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000052126 PLEKHA5 pleckstrin homology domain containing A5 -2.4530 0.0000
63340 ENSG00000147853 AK3 adenylate kinase 3 -2.4530 0.0000
63339 ENSG00000197451 HNRNPAB heterogeneous nuclear ribonucleoprotein A/B -2.4527 0.0000
63338 ENSG00000163499 CRYBA2 crystallin beta A2 -2.4527 0.0000
63337 ENSG00000165879 FRAT1 FRAT regulator of WNT signaling pathway 1 -2.4519 0.0000
63336 ENSG00000186767 SPIN4 spindlin family member 4 -2.4510 0.0000
63335 ENSG00000111276 CDKN1B cyclin dependent kinase inhibitor 1B -2.4508 0.0000
63334 ENSG00000162545 CAMK2N1 calcium/calmodulin dependent protein kinase II inhibitor 1 -2.4504 0.0000
63333 ENSG00000149313 AASDHPPT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase -2.4502 0.0000
63332 ENSG00000180667 YOD1 YOD1 deubiquitinase -2.4500 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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