Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481578

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481578


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7010000000000000000000-769Sequence Read ArchiveSRP074598SRP074598_M51Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeZygoteHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000259906 novel transcript 2.8074 0.0000
2 ENSG00000219902 RPL35P3 ribosomal protein L35 pseudogene 3 2.5850 0.0000
3 ENSG00000277879 novel transcript, antisense to SLC18A2 2.5850 0.0000
4 ENSG00000234261 novel transcript 2.5382 0.0000
5 ENSG00000243986 ENO1P3 enolase 1 pseudogene 3 2.4875 0.0000
6 ENSG00000271917 novel transcript 2.4534 0.0000
7 ENSG00000236646 LAMTOR5P1 late endosomal/lysosomal adaptor, MAPK and MTOR activator 5 pseudogene 1 2.4271 0.0000
8 ENSG00000185899 TAS2R60 taste 2 receptor member 60 2.3219 0.0000
9 ENSG00000201780 RNU6-275P RNA, U6 small nuclear 275, pseudogene 2.3219 0.0000
10 ENSG00000226438 novel transcript 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000252366 RNA5SP367 RNA, 5S ribosomal pseudogene 367 -1.7143 1.0000
63127 ENSG00000174327 SLC16A13 solute carrier family 16 member 13 -1.7143 0.4028
63126 ENSG00000278851 MIR6879 microRNA 6879 -1.7140 0.3896
63125 ENSG00000236816 ANKRD20A7P ankyrin repeat domain 20 family member A7, pseudogene -1.7134 0.0813
63124 ENSG00000264268 MIR4767 microRNA 4767 -1.7131 0.3322
63123 ENSG00000177683 THAP5 THAP domain containing 5 -1.7127 0.1879
63122 ENSG00000221869 CEBPD CCAAT enhancer binding protein delta -1.7117 0.2247
63121 ENSG00000229547 UBE2DNL ubiquitin conjugating enzyme E2 D N-terminal like (pseudogene) -1.7104 0.7449
63120 ENSG00000244400 RPS4XP12 ribosomal protein S4X pseudogene 12 -1.7094 1.0000
63119 ENSG00000266036 SLC9A3R1-AS1 SLC9A3R1 antisense RNA 1 -1.7091 0.1690

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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