Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481578

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2481578 Profile download	7010000000000000000000-769	Sequence Read Archive	SRP074598	SRP074598_M51	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Zygote	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000259906		novel transcript	2.8074	0.0000
2	ENSG00000219902	RPL35P3	ribosomal protein L35 pseudogene 3	2.5850	0.0000
3	ENSG00000277879		novel transcript, antisense to SLC18A2	2.5850	0.0000
4	ENSG00000234261		novel transcript	2.5382	0.0000
5	ENSG00000243986	ENO1P3	enolase 1 pseudogene 3	2.4875	0.0000
6	ENSG00000271917		novel transcript	2.4534	0.0000
7	ENSG00000236646	LAMTOR5P1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 5 pseudogene 1	2.4271	0.0000
8	ENSG00000185899	TAS2R60	taste 2 receptor member 60	2.3219	0.0000
9	ENSG00000201780	RNU6-275P	RNA, U6 small nuclear 275, pseudogene	2.3219	0.0000
10	ENSG00000226438		novel transcript	2.3219	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000252366	RNA5SP367	RNA, 5S ribosomal pseudogene 367	-1.7143	1.0000
63127	ENSG00000174327	SLC16A13	solute carrier family 16 member 13	-1.7143	0.4028
63126	ENSG00000278851	MIR6879	microRNA 6879	-1.7140	0.3896
63125	ENSG00000236816	ANKRD20A7P	ankyrin repeat domain 20 family member A7, pseudogene	-1.7134	0.0813
63124	ENSG00000264268	MIR4767	microRNA 4767	-1.7131	0.3322
63123	ENSG00000177683	THAP5	THAP domain containing 5	-1.7127	0.1879
63122	ENSG00000221869	CEBPD	CCAAT enhancer binding protein delta	-1.7117	0.2247
63121	ENSG00000229547	UBE2DNL	ubiquitin conjugating enzyme E2 D N-terminal like (pseudogene)	-1.7104	0.7449
63120	ENSG00000244400	RPS4XP12	ribosomal protein S4X pseudogene 12	-1.7094	1.0000
63119	ENSG00000266036	SLC9A3R1-AS1	SLC9A3R1 antisense RNA 1	-1.7091	0.1690

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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