SHOGoiN Cell Methylome: GSM2481578

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481578


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7010000000000000000000-769Sequence Read ArchiveSRP074598SRP074598_M51Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeZygoteHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000259906 novel transcript 2.8074 0.0000
2 ENSG00000219902 RPL35P3 ribosomal protein L35 pseudogene 3 2.5850 0.0000
3 ENSG00000277879 novel transcript, antisense to SLC18A2 2.5850 0.0000
4 ENSG00000234261 novel transcript 2.5382 0.0000
5 ENSG00000243986 ENO1P3 enolase 1 pseudogene 3 2.4875 0.0000
6 ENSG00000271917 novel transcript 2.4534 0.0000
7 ENSG00000236646 LAMTOR5P1 late endosomal/lysosomal adaptor, MAPK and MTOR activator 5 pseudogene 1 2.4271 0.0000
8 ENSG00000185899 TAS2R60 taste 2 receptor member 60 2.3219 0.0000
9 ENSG00000201780 RNU6-275P RNA, U6 small nuclear 275, pseudogene 2.3219 0.0000
10 ENSG00000226438 novel transcript 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000161547 SRSF2 serine and arginine rich splicing factor 2 -1.8000 0.0069
63340 ENSG00000279278 novel transcript -1.8000 1.0000
63339 ENSG00000236094 LINC00545 long intergenic non-protein coding RNA 545 -1.8000 1.0000
63338 ENSG00000230913 NPM1P51 nucleophosmin 1 pseudogene 51 -1.8000 0.4097
63337 ENSG00000228034 HMGN2P21 high mobility group nucleosomal binding domain 2 pseudogene 21 -1.8000 0.6258
63336 ENSG00000226405 hydroxysteroid (17-beta) dehydrogenase 12 (HSD17B12) pseudogene -1.8000 1.0000
63335 ENSG00000168329 CX3CR1 C-X3-C motif chemokine receptor 1 -1.8000 1.0000
63334 ENSG00000152422 XRCC4 X-ray repair cross complementing 4 -1.8000 1.0000
63333 ENSG00000186010 NDUFA13 NADH:ubiquinone oxidoreductase subunit A13 -1.7999 0.1020
63332 ENSG00000006059 KRT33A keratin 33A -1.7999 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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