Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM2481578
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481578
Profile download
7010000000000000000000-769
Sequence Read Archive
SRP074598
SRP074598_M51
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Zygote
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000259906
novel transcript
2.8074
0.0000
2
ENSG00000219902
RPL35P3
ribosomal protein L35 pseudogene 3
2.5850
0.0000
3
ENSG00000277879
novel transcript, antisense to SLC18A2
2.5850
0.0000
4
ENSG00000234261
novel transcript
2.5382
0.0000
5
ENSG00000243986
ENO1P3
enolase 1 pseudogene 3
2.4875
0.0000
6
ENSG00000271917
novel transcript
2.4534
0.0000
7
ENSG00000236646
LAMTOR5P1
late endosomal/lysosomal adaptor, MAPK and MTOR activator 5 pseudogene 1
2.4271
0.0000
8
ENSG00000185899
TAS2R60
taste 2 receptor member 60
2.3219
0.0000
9
ENSG00000201780
RNU6-275P
RNA, U6 small nuclear 275, pseudogene
2.3219
0.0000
10
ENSG00000226438
novel transcript
2.3219
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000252366
RNA5SP367
RNA, 5S ribosomal pseudogene 367
-1.7143
1.0000
63127
ENSG00000174327
SLC16A13
solute carrier family 16 member 13
-1.7143
0.4028
63126
ENSG00000278851
MIR6879
microRNA 6879
-1.7140
0.3896
63125
ENSG00000236816
ANKRD20A7P
ankyrin repeat domain 20 family member A7, pseudogene
-1.7134
0.0813
63124
ENSG00000264268
MIR4767
microRNA 4767
-1.7131
0.3322
63123
ENSG00000177683
THAP5
THAP domain containing 5
-1.7127
0.1879
63122
ENSG00000221869
CEBPD
CCAAT enhancer binding protein delta
-1.7117
0.2247
63121
ENSG00000229547
UBE2DNL
ubiquitin conjugating enzyme E2 D N-terminal like (pseudogene)
-1.7104
0.7449
63120
ENSG00000244400
RPS4XP12
ribosomal protein S4X pseudogene 12
-1.7094
1.0000
63119
ENSG00000266036
SLC9A3R1-AS1
SLC9A3R1 antisense RNA 1
-1.7091
0.1690
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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