SHOGoiN Cell Methylome: GSM2481578
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481578 Profile download | 7010000000000000000000-769 | Sequence Read Archive | SRP074598 | SRP074598_M51 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Zygote | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000259906 | novel transcript | 2.8074 | 0.0000 | |
| 2 | ENSG00000219902 | RPL35P3 | ribosomal protein L35 pseudogene 3 | 2.5850 | 0.0000 |
| 3 | ENSG00000277879 | novel transcript, antisense to SLC18A2 | 2.5850 | 0.0000 | |
| 4 | ENSG00000234261 | novel transcript | 2.5382 | 0.0000 | |
| 5 | ENSG00000243986 | ENO1P3 | enolase 1 pseudogene 3 | 2.4875 | 0.0000 |
| 6 | ENSG00000271917 | novel transcript | 2.4534 | 0.0000 | |
| 7 | ENSG00000236646 | LAMTOR5P1 | late endosomal/lysosomal adaptor, MAPK and MTOR activator 5 pseudogene 1 | 2.4271 | 0.0000 |
| 8 | ENSG00000185899 | TAS2R60 | taste 2 receptor member 60 | 2.3219 | 0.0000 |
| 9 | ENSG00000201780 | RNU6-275P | RNA, U6 small nuclear 275, pseudogene | 2.3219 | 0.0000 |
| 10 | ENSG00000226438 | novel transcript | 2.3219 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000161547 | SRSF2 | serine and arginine rich splicing factor 2 | -1.8000 | 0.0069 |
| 63340 | ENSG00000279278 | novel transcript | -1.8000 | 1.0000 | |
| 63339 | ENSG00000236094 | LINC00545 | long intergenic non-protein coding RNA 545 | -1.8000 | 1.0000 |
| 63338 | ENSG00000230913 | NPM1P51 | nucleophosmin 1 pseudogene 51 | -1.8000 | 0.4097 |
| 63337 | ENSG00000228034 | HMGN2P21 | high mobility group nucleosomal binding domain 2 pseudogene 21 | -1.8000 | 0.6258 |
| 63336 | ENSG00000226405 | hydroxysteroid (17-beta) dehydrogenase 12 (HSD17B12) pseudogene | -1.8000 | 1.0000 | |
| 63335 | ENSG00000168329 | CX3CR1 | C-X3-C motif chemokine receptor 1 | -1.8000 | 1.0000 |
| 63334 | ENSG00000152422 | XRCC4 | X-ray repair cross complementing 4 | -1.8000 | 1.0000 |
| 63333 | ENSG00000186010 | NDUFA13 | NADH:ubiquinone oxidoreductase subunit A13 | -1.7999 | 0.1020 |
| 63332 | ENSG00000006059 | KRT33A | keratin 33A | -1.7999 | 1.0000 |
