SHOGoiN Cell Methylome: GSM2481579

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481579


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5090101000001000000000-236Sequence Read ArchiveSRP074598SRP074598_M52Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeSpermHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000104237 RP1 RP1 axonemal microtubule associated 2.5850 0.0100
2 ENSG00000169241 SLC50A1 solute carrier family 50 member 1 2.5850 0.0100
3 ENSG00000179085 DPM3 dolichyl-phosphate mannosyltransferase subunit 3 2.5850 0.0100
4 ENSG00000186073 C15orf41 chromosome 15 open reading frame 41 2.5850 0.0001
5 ENSG00000206996 RNU6-842P RNA, U6 small nuclear 842, pseudogene 2.5850 0.0100
6 ENSG00000217195 5'-nucleotidase domain containing 1 (NT5DC1) pseudogene 2.5850 0.0001
7 ENSG00000220739 5'-nucleotidase domain containing 1 (NT5DC1) pseudogene 2.5850 0.0001
8 ENSG00000226469 ADAM1B ADAM metallopeptidase domain 1B (pseudogene) 2.5850 0.0001
9 ENSG00000227857 novel transcript 2.5850 0.0100
10 ENSG00000235812 ADAM21P1 ADAM metallopeptidase domain 21 pseudogene 1 2.5850 0.0100

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000240498 CDKN2B-AS1 CDKN2B antisense RNA 1 -1.5850 0.5207
63340 ENSG00000240152 LINC02271 long intergenic non-protein coding RNA 2271 -1.5850 0.5207
63339 ENSG00000239683 ribosomal protein L7a (RPL7A) pseudogene -1.5850 0.5207
63338 ENSG00000239143 NA -1.5850 0.0000
63337 ENSG00000238444 RNU6-893P RNA, U6 small nuclear 893, pseudogene -1.5850 0.0000
63336 ENSG00000238154 USP9YP4 USP9Y pseudogene 4 -1.5850 0.0000
63335 ENSG00000237976 novel transcript -1.5850 0.0876
63334 ENSG00000237666 pseudogene similar to part of anaphase promoting complex subunit 1 ANAPC1 -1.5850 0.0014
63333 ENSG00000237624 OXCT2P1 3-oxoacid CoA-transferase 2 pseudogene 1 -1.5850 0.0876
63332 ENSG00000237463 LRRC52-AS1 LRRC52 antisense RNA 1 -1.5850 0.1562

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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