Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481579

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481579


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5090101000001000000000-236Sequence Read ArchiveSRP074598SRP074598_M52Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeSpermHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000104237 RP1 RP1 axonemal microtubule associated 2.5850 0.0100
2 ENSG00000169241 SLC50A1 solute carrier family 50 member 1 2.5850 0.0100
3 ENSG00000179085 DPM3 dolichyl-phosphate mannosyltransferase subunit 3, regulatory 2.5850 0.0100
4 ENSG00000186073 CDIN1 CDAN1 interacting nuclease 1 2.5850 0.0001
5 ENSG00000206996 RNU6-842P RNA, U6 small nuclear 842, pseudogene 2.5850 0.0100
6 ENSG00000217195 5'-nucleotidase domain containing 1 (NT5DC1) pseudogene 2.5850 0.0001
7 ENSG00000220739 5'-nucleotidase domain containing 1 (NT5DC1) pseudogene 2.5850 0.0001
8 ENSG00000226469 ADAM1B ADAM metallopeptidase domain 1B (pseudogene) 2.5850 0.0001
9 ENSG00000227857 novel transcript 2.5850 0.0100
10 ENSG00000235812 ADAM21P1 ADAM metallopeptidase domain 21 pseudogene 1 2.5850 0.0100

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000102393 GLA galactosidase alpha -1.5850 0.0014
63127 ENSG00000101336 HCK HCK proto-oncogene, Src family tyrosine kinase -1.5850 0.0004
63126 ENSG00000100124 ANKRD54 ankyrin repeat domain 54 -1.5850 0.0000
63125 ENSG00000099219 ERMP1 endoplasmic reticulum metallopeptidase 1 -1.5850 0.0255
63124 ENSG00000095752 IL11 interleukin 11 -1.5850 0.0000
63123 ENSG00000092330 TINF2 TERF1 interacting nuclear factor 2 -1.5850 0.0001
63122 ENSG00000081386 ZNF510 zinc finger protein 510 -1.5850 0.0000
63121 ENSG00000075151 EIF4G3 eukaryotic translation initiation factor 4 gamma 3 -1.5850 0.0026
63120 ENSG00000055917 PUM2 pumilio RNA binding family member 2 -1.5850 0.5207
63119 ENSG00000011083 SLC6A7 solute carrier family 6 member 7 -1.5850 0.5207

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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