Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481580

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481580


Profile download
5090101000001000000000-236Sequence Read ArchiveSRP074598SRP074598_M53Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeSpermHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000213237 PTMAP10 prothymosin alpha pseudogene 10 2.6962 0.0001
2 ENSG00000234717 TMEM212-AS1 TMEM212 antisense RNA 1 2.6962 0.0001
3 ENSG00000254491 nuclear transcription factor Y, gamma (NFYC) pseudogene 2.6962 0.0001
4 ENSG00000174912 METTL15P1 methyltransferase like 15 pseudogene 1 2.5850 0.0112
5 ENSG00000201846 RNA5SP166 RNA, 5S ribosomal pseudogene 166 2.5850 0.0001
6 ENSG00000243593 LINC02049 long intergenic non-protein coding RNA 2049 2.5850 0.0001
7 ENSG00000244493 SLC9A9-AS2 SLC9A9 antisense RNA 2 2.5850 0.0001
8 ENSG00000276532 NA 2.5850 0.0000
9 ENSG00000250592 novel transcript, antisense to ATP2C1 2.5714 0.0000
10 ENSG00000233430 phosphodiesterase 4D interacting protein (PDE4DIP) pseudogene 2.3900 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63221 ENSG00000135482 ZC3H10 zinc finger CCCH-type containing 10 -1.4651 0.0000
63220 ENSG00000280303 ERICD E2F1-regulated inhibitor of cell death -1.4649 0.0000
63219 ENSG00000241347 RN7SL466P RNA, 7SL, cytoplasmic 466, pseudogene -1.4644 0.0000
63218 ENSG00000198839 ZNF277 zinc finger protein 277 -1.4643 0.0000
63217 ENSG00000129749 CHRNA10 cholinergic receptor nicotinic alpha 10 subunit -1.4640 0.0000
63216 ENSG00000268320 SCGB1C2 secretoglobin family 1C member 2 -1.4634 0.0000
63215 ENSG00000275379 H3C11 H3 clustered histone 11 -1.4631 0.0000
63214 ENSG00000226447 ZNF25-DT ZNF25 divergent transcript -1.4630 0.0000
63213 ENSG00000175395 ZNF25 zinc finger protein 25 -1.4630 0.0000
63212 ENSG00000105550 FGF21 fibroblast growth factor 21 -1.4625 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...