SHOGoiN Cell Methylome: GSM2481580

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481580


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5090101000001000000000-236Sequence Read ArchiveSRP074598SRP074598_M53Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeSpermHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000213237 PTMAP10 prothymosin alpha pseudogene 10 2.6962 0.0001
2 ENSG00000234717 TMEM212-AS1 TMEM212 antisense RNA 1 2.6962 0.0001
3 ENSG00000254491 nuclear transcription factor Y, gamma (NFYC) pseudogene 2.6962 0.0001
4 ENSG00000174912 METTL15P1 methyltransferase like 15 pseudogene 1 2.5850 0.0112
5 ENSG00000201846 RNA5SP166 RNA, 5S ribosomal pseudogene 166 2.5850 0.0001
6 ENSG00000243593 LINC02049 long intergenic non-protein coding RNA 2049 2.5850 0.0001
7 ENSG00000244493 SLC9A9-AS2 SLC9A9 antisense RNA 2 2.5850 0.0001
8 ENSG00000276532 NA 2.5850 0.0000
9 ENSG00000250592 novel transcript, antisense to ATP2C1 2.5714 0.0000
10 ENSG00000233430 phosphodiesterase 4D interacting protein (PDE4DIP) pseudogene 2.3900 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000205981 DNAJC19 DnaJ heat shock protein family (Hsp40) member C19 -1.5234 0.0000
63340 ENSG00000284048 novel transcript -1.5232 0.0000
63339 ENSG00000240694 PNMA2 PNMA family member 2 -1.5224 0.0000
63338 ENSG00000225280 novel transcript, antisense to NKX2-4 -1.5223 0.0000
63337 ENSG00000125816 NKX2-4 NK2 homeobox 4 -1.5223 0.0000
63336 ENSG00000263583 MIR4522 microRNA 4522 -1.5221 0.0000
63335 ENSG00000146374 RSPO3 R-spondin 3 -1.5200 0.0000
63334 ENSG00000260256 novel transcript -1.5200 0.0002
63333 ENSG00000252475 RNU6-1332P RNA, U6 small nuclear 1332, pseudogene -1.5200 0.0002
63332 ENSG00000134996 OSTF1 osteoclast stimulating factor 1 -1.5195 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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