Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481580

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481580


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5090101000001000000000-236Sequence Read ArchiveSRP074598SRP074598_M53Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeSpermHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000213237 PTMAP10 prothymosin alpha pseudogene 10 2.6962 0.0001
2 ENSG00000234717 TMEM212-AS1 TMEM212 antisense RNA 1 2.6962 0.0001
3 ENSG00000254491 nuclear transcription factor Y, gamma (NFYC) pseudogene 2.6962 0.0001
4 ENSG00000174912 METTL15P1 methyltransferase like 15 pseudogene 1 2.5850 0.0112
5 ENSG00000201846 RNA5SP166 RNA, 5S ribosomal pseudogene 166 2.5850 0.0001
6 ENSG00000243593 LINC02049 long intergenic non-protein coding RNA 2049 2.5850 0.0001
7 ENSG00000244493 SLC9A9-AS2 SLC9A9 antisense RNA 2 2.5850 0.0001
8 ENSG00000276532 Metazoan signal recognition particle RNA 2.5850 0.0000
9 ENSG00000250592 novel transcript, antisense to ATP2C1 2.5714 0.0000
10 ENSG00000233430 phosphodiesterase 4D interacting protein (PDE4DIP) pseudogene 2.3900 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000166483 WEE1 WEE1 G2 checkpoint kinase -1.4477 0.0000
63172 ENSG00000272410 novel protein -1.4469 0.0000
63171 ENSG00000151322 NPAS3 neuronal PAS domain protein 3 -1.4469 0.0000
63170 ENSG00000108654 DDX5 DEAD-box helicase 5 -1.4467 0.0000
63169 ENSG00000265535 RN7SL475P RNA, 7SL, cytoplasmic 475, pseudogene -1.4463 0.0000
63168 ENSG00000108381 ASPA aspartoacylase -1.4462 0.0000
63167 ENSG00000258240 novel transcript -1.4456 0.0000
63166 ENSG00000253688 novel transcript -1.4453 0.0000
63165 ENSG00000279160 TEC -1.4453 0.0000
63164 ENSG00000170088 TMEM192 transmembrane protein 192 -1.4450 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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