SHOGoiN Cell Methylome: GSM2481581

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481581


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5030203000000000000000-761Sequence Read ArchiveSRP074598SRP074598_M54Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMetaphase II oocyteHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000276400 VN1R9P vomeronasal 1 receptor 9 pseudogene 2.9749 0.0000
2 ENSG00000224468 LAMC1-AS1 LAMC1 antisense RNA 1 2.8074 0.0000
3 ENSG00000221023 RNU6ATAC19P RNA, U6atac small nuclear 19, pseudogene 2.6591 0.0000
4 ENSG00000255003 CYCSP28 CYCS pseudogene 28 2.6406 0.0000
5 ENSG00000120217 CD274 CD274 molecule 2.5850 0.0000
6 ENSG00000224101 ELMO1-AS1 ELMO1 antisense RNA 1 2.5850 0.0000
7 ENSG00000231345 BEND3P1 BEN domain containing 3 pseudogene 1 2.5850 0.0000
8 ENSG00000233516 novel transcript 2.5850 0.0000
9 ENSG00000137720 C11orf1 chromosome 11 open reading frame 1 2.4973 0.0000
10 ENSG00000255561 FDXACB1 ferredoxin-fold anticodon binding domain containing 1 2.4973 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000283879 mitochondrially encoded NADH dehydrogenase 6 (MT-ND6) pseudogene -1.8435 0.5634
63340 ENSG00000266529 MTCYBP13 MT-CYB pseudogene 13 -1.8435 0.5634
63339 ENSG00000226777 FAM30A family with sequence similarity 30 member A -1.8433 0.2607
63338 ENSG00000283237 MIR550B1 microRNA 550b-1 -1.8431 0.0000
63337 ENSG00000207771 MIR550A1 microRNA 550a-1 -1.8431 0.0000
63336 ENSG00000131791 PRKAB2 protein kinase AMP-activated non-catalytic subunit beta 2 -1.8428 0.3987
63335 ENSG00000224592 novel transcript -1.8427 0.0000
63334 ENSG00000156968 MPV17L MPV17 mitochondrial inner membrane protein like -1.8415 0.0923
63333 ENSG00000229203 novel transcript -1.8396 0.2594
63332 ENSG00000180739 S1PR5 sphingosine-1-phosphate receptor 5 -1.8387 0.0015

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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