Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481581

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481581


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5030203000000000000000-761Sequence Read ArchiveSRP074598SRP074598_M54Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMetaphase II oocyteHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000276400 VN1R9P vomeronasal 1 receptor 9 pseudogene 2.9749 0.0000
2 ENSG00000224468 LAMC1-AS1 LAMC1 antisense RNA 1 2.8074 0.0000
3 ENSG00000221023 RNU6ATAC19P RNA, U6atac small nuclear 19, pseudogene 2.6591 0.0000
4 ENSG00000255003 CYCSP28 CYCS pseudogene 28 2.6406 0.0000
5 ENSG00000120217 CD274 CD274 molecule 2.5850 0.0000
6 ENSG00000224101 ELMO1-AS1 ELMO1 antisense RNA 1 2.5850 0.0000
7 ENSG00000231345 BEND3P1 BEN domain containing 3 pseudogene 1 2.5850 0.0000
8 ENSG00000233516 novel transcript 2.5850 0.0000
9 ENSG00000137720 C11orf1 chromosome 11 open reading frame 1 2.4973 0.0000
10 ENSG00000255561 FDXACB1 ferredoxin-fold anticodon binding domain containing 1 2.4973 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000181562 EDDM3A epididymal protein 3A -1.7500 1.0000
63127 ENSG00000178287 SPAG11A sperm associated antigen 11A -1.7500 1.0000
63126 ENSG00000145863 GABRA6 gamma-aminobutyric acid type A receptor subunit alpha6 -1.7500 1.0000
63125 ENSG00000070193 FGF10 fibroblast growth factor 10 -1.7500 0.6264
63124 ENSG00000175087 PDIK1L PDLIM1 interacting kinase 1 like -1.7494 0.0460
63123 ENSG00000106123 EPHB6 EPH receptor B6 -1.7493 0.0000
63122 ENSG00000165895 ARHGAP42 Rho GTPase activating protein 42 -1.7484 0.7621
63121 ENSG00000271303 SRXN1 sulfiredoxin 1 -1.7463 0.8945
63120 ENSG00000235079 ZRANB2-AS1 ZRANB2 antisense RNA 1 -1.7463 0.0000
63119 ENSG00000284200 MIR6847 microRNA 6847 -1.7463 0.0768

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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