Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481582

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2481582 Profile download	7180101000000000000000-755	Sequence Read Archive	SRP074598	SRP074598_M55	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	GV oocyte	Human	Genitalia	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000254132	MTND6P3	MT-ND6 pseudogene 3	2.5509	0.0000
2	ENSG00000206998		Y RNA	2.5236	0.0000
3	ENSG00000109670	FBXW7	F-box and WD repeat domain containing 7	2.0000	0.0000
4	ENSG00000125787	GNRH2	gonadotropin releasing hormone 2	2.0000	0.0000
5	ENSG00000232578		FAST kinase domains 1 (FASTKD1) pseudogene	2.0000	0.0000
6	ENSG00000258342		novel transcript, sense overlapping BRMS1L	2.0000	0.0006
7	ENSG00000166171	DPCD	deleted in primary ciliary dyskinesia homolog (mouse)	1.7628	0.0000
8	ENSG00000141376	BCAS3	BCAS3 microtubule associated cell migration factor	1.6250	0.0000
9	ENSG00000029153	ARNTL2	aryl hydrocarbon receptor nuclear translocator like 2	1.5850	0.0068
10	ENSG00000055044	NOP58	NOP58 ribonucleoprotein	1.5850	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000242114	MTFP1	mitochondrial fission process 1	-1.0419	0.3650
63127	ENSG00000144802	NFKBIZ	NFKB inhibitor zeta	-1.0418	0.0498
63126	ENSG00000225205		novel transcript	-1.0414	0.0467
63125	ENSG00000199866		Y RNA	-1.0414	0.0467
63124	ENSG00000152256	PDK1	pyruvate dehydrogenase kinase 1	-1.0414	0.0467
63123	ENSG00000258661		novel transcript, antisense to PAX9	-1.0390	0.1079
63122	ENSG00000167459	LINC00905	long intergenic non-protein coding RNA 905	-1.0390	0.6367
63121	ENSG00000224459	SLC25A34-AS1	SLC25A34 and TMEM82 antisense RNA 1	-1.0389	0.2314
63120	ENSG00000164610	RP9	RP9 pre-mRNA splicing factor	-1.0378	1.0000
63119	ENSG00000101986	ABCD1	ATP binding cassette subfamily D member 1	-1.0378	1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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