Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM2481582
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481582
Profile download
7180101000000000000000-755
Sequence Read Archive
SRP074598
SRP074598_M55
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
GV oocyte
Human
Genitalia
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000254132
MTND6P3
MT-ND6 pseudogene 3
2.5509
0.0000
2
ENSG00000206998
Y RNA
2.5236
0.0000
3
ENSG00000109670
FBXW7
F-box and WD repeat domain containing 7
2.0000
0.0000
4
ENSG00000125787
GNRH2
gonadotropin releasing hormone 2
2.0000
0.0000
5
ENSG00000232578
FAST kinase domains 1 (FASTKD1) pseudogene
2.0000
0.0000
6
ENSG00000258342
novel transcript, sense overlapping BRMS1L
2.0000
0.0006
7
ENSG00000166171
DPCD
deleted in primary ciliary dyskinesia homolog (mouse)
1.7628
0.0000
8
ENSG00000141376
BCAS3
BCAS3 microtubule associated cell migration factor
1.6250
0.0000
9
ENSG00000029153
ARNTL2
aryl hydrocarbon receptor nuclear translocator like 2
1.5850
0.0068
10
ENSG00000055044
NOP58
NOP58 ribonucleoprotein
1.5850
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000242114
MTFP1
mitochondrial fission process 1
-1.0419
0.3650
63127
ENSG00000144802
NFKBIZ
NFKB inhibitor zeta
-1.0418
0.0498
63126
ENSG00000225205
novel transcript
-1.0414
0.0467
63125
ENSG00000199866
Y RNA
-1.0414
0.0467
63124
ENSG00000152256
PDK1
pyruvate dehydrogenase kinase 1
-1.0414
0.0467
63123
ENSG00000258661
novel transcript, antisense to PAX9
-1.0390
0.1079
63122
ENSG00000167459
LINC00905
long intergenic non-protein coding RNA 905
-1.0390
0.6367
63121
ENSG00000224459
SLC25A34-AS1
SLC25A34 and TMEM82 antisense RNA 1
-1.0389
0.2314
63120
ENSG00000164610
RP9
RP9 pre-mRNA splicing factor
-1.0378
1.0000
63119
ENSG00000101986
ABCD1
ATP binding cassette subfamily D member 1
-1.0378
1.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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