SHOGoiN Cell Methylome: GSM2481582

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481582


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7180101000000000000000-755Sequence Read ArchiveSRP074598SRP074598_M55Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeGV oocyteHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000254132 MTND6P3 MT-ND6 pseudogene 3 2.5509 0.0000
2 ENSG00000206998 NA 2.5236 0.0000
3 ENSG00000109670 FBXW7 F-box and WD repeat domain containing 7 2.0000 0.0000
4 ENSG00000125787 GNRH2 gonadotropin releasing hormone 2 2.0000 0.0000
5 ENSG00000232578 FAST kinase domains 1 (FASTKD1) pseudogene 2.0000 0.0000
6 ENSG00000258342 novel transcript, sense overlapping BRMS1L 2.0000 0.0006
7 ENSG00000166171 DPCD deleted in primary ciliary dyskinesia homolog (mouse) 1.7628 0.0000
8 ENSG00000141376 BCAS3 BCAS3 microtubule associated cell migration factor 1.6250 0.0000
9 ENSG00000029153 ARNTL2 aryl hydrocarbon receptor nuclear translocator like 2 1.5850 0.0068
10 ENSG00000055044 NOP58 NOP58 ribonucleoprotein 1.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000173473 SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 -1.1678 1.0000
63340 ENSG00000272913 novel transcript -1.1675 1.0000
63339 ENSG00000229689 Ankyrin repeat domain-containing protein pseudogene -1.1675 1.0000
63338 ENSG00000271984 novel transcript, antisense to CTSA -1.1672 0.0207
63337 ENSG00000124257 NEURL2 neuralized E3 ubiquitin protein ligase 2 -1.1672 0.0207
63336 ENSG00000064601 CTSA cathepsin A -1.1672 0.0207
63335 ENSG00000066322 ELOVL1 ELOVL fatty acid elongase 1 -1.1671 0.0498
63334 ENSG00000280424 TEC -1.1667 0.6367
63333 ENSG00000207349 RNVU1-17 RNA, variant U1 small nuclear 17 -1.1652 1.0000
63332 ENSG00000267598 novel transcript, antisense to IER2 -1.1644 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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