SHOGoiN Cell Methylome: GSM2481582
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481582 Profile download | 7180101000000000000000-755 | Sequence Read Archive | SRP074598 | SRP074598_M55 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | GV oocyte | Human | Genitalia | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000254132 | MTND6P3 | MT-ND6 pseudogene 3 | 2.5509 | 0.0000 |
| 2 | ENSG00000206998 | NA | 2.5236 | 0.0000 | |
| 3 | ENSG00000109670 | FBXW7 | F-box and WD repeat domain containing 7 | 2.0000 | 0.0000 |
| 4 | ENSG00000125787 | GNRH2 | gonadotropin releasing hormone 2 | 2.0000 | 0.0000 |
| 5 | ENSG00000232578 | FAST kinase domains 1 (FASTKD1) pseudogene | 2.0000 | 0.0000 | |
| 6 | ENSG00000258342 | novel transcript, sense overlapping BRMS1L | 2.0000 | 0.0006 | |
| 7 | ENSG00000166171 | DPCD | deleted in primary ciliary dyskinesia homolog (mouse) | 1.7628 | 0.0000 |
| 8 | ENSG00000141376 | BCAS3 | BCAS3 microtubule associated cell migration factor | 1.6250 | 0.0000 |
| 9 | ENSG00000029153 | ARNTL2 | aryl hydrocarbon receptor nuclear translocator like 2 | 1.5850 | 0.0068 |
| 10 | ENSG00000055044 | NOP58 | NOP58 ribonucleoprotein | 1.5850 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000173473 | SMARCC1 | SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 | -1.1678 | 1.0000 |
| 63340 | ENSG00000272913 | novel transcript | -1.1675 | 1.0000 | |
| 63339 | ENSG00000229689 | Ankyrin repeat domain-containing protein pseudogene | -1.1675 | 1.0000 | |
| 63338 | ENSG00000271984 | novel transcript, antisense to CTSA | -1.1672 | 0.0207 | |
| 63337 | ENSG00000124257 | NEURL2 | neuralized E3 ubiquitin protein ligase 2 | -1.1672 | 0.0207 |
| 63336 | ENSG00000064601 | CTSA | cathepsin A | -1.1672 | 0.0207 |
| 63335 | ENSG00000066322 | ELOVL1 | ELOVL fatty acid elongase 1 | -1.1671 | 0.0498 |
| 63334 | ENSG00000280424 | TEC | -1.1667 | 0.6367 | |
| 63333 | ENSG00000207349 | RNVU1-17 | RNA, variant U1 small nuclear 17 | -1.1652 | 1.0000 |
| 63332 | ENSG00000267598 | novel transcript, antisense to IER2 | -1.1644 | 1.0000 |
