Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481582

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481582


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7180101000000000000000-755Sequence Read ArchiveSRP074598SRP074598_M55Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeGV oocyteHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000254132 MTND6P3 MT-ND6 pseudogene 3 2.5509 0.0000
2 ENSG00000206998 Y RNA 2.5236 0.0000
3 ENSG00000109670 FBXW7 F-box and WD repeat domain containing 7 2.0000 0.0000
4 ENSG00000125787 GNRH2 gonadotropin releasing hormone 2 2.0000 0.0000
5 ENSG00000232578 FAST kinase domains 1 (FASTKD1) pseudogene 2.0000 0.0000
6 ENSG00000258342 novel transcript, sense overlapping BRMS1L 2.0000 0.0006
7 ENSG00000166171 DPCD deleted in primary ciliary dyskinesia homolog (mouse) 1.7628 0.0000
8 ENSG00000141376 BCAS3 BCAS3 microtubule associated cell migration factor 1.6250 0.0000
9 ENSG00000029153 ARNTL2 aryl hydrocarbon receptor nuclear translocator like 2 1.5850 0.0068
10 ENSG00000055044 NOP58 NOP58 ribonucleoprotein 1.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000242114 MTFP1 mitochondrial fission process 1 -1.0419 0.3650
63127 ENSG00000144802 NFKBIZ NFKB inhibitor zeta -1.0418 0.0498
63126 ENSG00000225205 novel transcript -1.0414 0.0467
63125 ENSG00000199866 Y RNA -1.0414 0.0467
63124 ENSG00000152256 PDK1 pyruvate dehydrogenase kinase 1 -1.0414 0.0467
63123 ENSG00000258661 novel transcript, antisense to PAX9 -1.0390 0.1079
63122 ENSG00000167459 LINC00905 long intergenic non-protein coding RNA 905 -1.0390 0.6367
63121 ENSG00000224459 SLC25A34-AS1 SLC25A34 and TMEM82 antisense RNA 1 -1.0389 0.2314
63120 ENSG00000164610 RP9 RP9 pre-mRNA splicing factor -1.0378 1.0000
63119 ENSG00000101986 ABCD1 ATP binding cassette subfamily D member 1 -1.0378 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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