Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481583

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481583


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7180101000000000000000-755Sequence Read ArchiveSRP074598SRP074598_M56Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeGV oocyteHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000124193 SRSF6 serine and arginine rich splicing factor 6 2.2224 0.0000
2 ENSG00000206998 Y RNA 2.2224 0.0000
3 ENSG00000100271 TTLL1 tubulin tyrosine ligase like 1 2.0000 0.0000
4 ENSG00000152620 NADK2 NAD kinase 2, mitochondrial 2.0000 0.0000
5 ENSG00000233491 novel pseudogene containing cadherin repeats 2.0000 0.0009
6 ENSG00000234735 ribosomal protein S25 (RPS25) pseudogene 2.0000 0.0000
7 ENSG00000257542 OR7E47P olfactory receptor family 7 subfamily E member 47 pseudogene 1.7925 0.0000
8 ENSG00000257663 novel transcript, antisense to C12orf44 1.7925 0.0000
10 ENSG00000068784 SRBD1 S1 RNA binding domain 1 1.5850 0.0092
63119 ENSG00000283765 novel protein -1.0000 1.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000283863 MIR3960 microRNA 3960 -1.0000 1.0000
63127 ENSG00000283858 MIR3674 microRNA 3674 -1.0000 1.0000
63126 ENSG00000283848 MIR6872 microRNA 6872 -1.0000 1.0000
63125 ENSG00000283836 MIR6734 microRNA 6734 -1.0000 0.3889
63124 ENSG00000283829 MIR378I microRNA 378i -1.0000 0.1076
63123 ENSG00000283815 MIR18A microRNA 18a -1.0000 1.0000
63122 ENSG00000283796 MIR6510 microRNA 6510 -1.0000 0.6129
63121 ENSG00000283788 MIR936 microRNA 936 -1.0000 1.0000
63120 ENSG00000283782 novel protein -1.0000 1.0000
63119 ENSG00000283765 novel protein -1.0000 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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