SHOGoiN Cell Methylome: GSM2481583
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481583 Profile download | 7180101000000000000000-755 | Sequence Read Archive | SRP074598 | SRP074598_M56 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | GV oocyte | Human | Genitalia | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000124193 | SRSF6 | serine and arginine rich splicing factor 6 | 2.2224 | 0.0000 |
| 2 | ENSG00000206998 | NA | 2.2224 | 0.0000 | |
| 3 | ENSG00000100271 | TTLL1 | tubulin tyrosine ligase like 1 | 2.0000 | 0.0000 |
| 4 | ENSG00000152620 | NADK2 | NAD kinase 2, mitochondrial | 2.0000 | 0.0000 |
| 5 | ENSG00000233491 | novel pseudogene containing cadherin repeats | 2.0000 | 0.0009 | |
| 6 | ENSG00000234735 | ribosomal protein S25 (RPS25) pseudogene | 2.0000 | 0.0000 | |
| 7 | ENSG00000257542 | OR7E47P | olfactory receptor family 7 subfamily E member 47 pseudogene | 1.7925 | 0.0000 |
| 8 | ENSG00000257663 | novel transcript, antisense to C12orf44 | 1.7925 | 0.0000 | |
| 10 | ENSG00000068784 | SRBD1 | S1 RNA binding domain 1 | 1.5850 | 0.0092 |
| 63332 | ENSG00000162241 | SLC25A45 | solute carrier family 25 member 45 | -1.1678 | 0.6752 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000176887 | SOX11 | SRY-box 11 | -1.1887 | 0.4974 |
| 63340 | ENSG00000249158 | PCDHA11 | protocadherin alpha 11 | -1.1876 | 0.0017 |
| 63339 | ENSG00000147804 | SLC39A4 | solute carrier family 39 member 4 | -1.1837 | 0.0001 |
| 63338 | ENSG00000130595 | TNNT3 | troponin T3, fast skeletal type | -1.1786 | 1.0000 |
| 63337 | ENSG00000233469 | ST6GALNAC4P1 | ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 4 pseudogene 1 | -1.1781 | 1.0000 |
| 63336 | ENSG00000199837 | RNA5SP71 | RNA, 5S ribosomal pseudogene 71 | -1.1755 | 0.6282 |
| 63335 | ENSG00000157060 | SHCBP1L | SHC binding and spindle associated 1 like | -1.1755 | 0.6282 |
| 63334 | ENSG00000100364 | KIAA0930 | KIAA0930 | -1.1755 | 0.6282 |
| 63333 | ENSG00000177839 | PCDHB9 | protocadherin beta 9 | -1.1733 | 0.0452 |
| 63332 | ENSG00000162241 | SLC25A45 | solute carrier family 25 member 45 | -1.1678 | 0.6752 |
