Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
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SHOGoiN Cell Methylome: GSM2481583
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481583
Profile download
7180101000000000000000-755
Sequence Read Archive
SRP074598
SRP074598_M56
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
GV oocyte
Human
Genitalia
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000124193
SRSF6
serine and arginine rich splicing factor 6
2.2224
0.0000
2
ENSG00000206998
Y RNA
2.2224
0.0000
3
ENSG00000100271
TTLL1
tubulin tyrosine ligase like 1
2.0000
0.0000
4
ENSG00000152620
NADK2
NAD kinase 2, mitochondrial
2.0000
0.0000
5
ENSG00000233491
novel pseudogene containing cadherin repeats
2.0000
0.0009
6
ENSG00000234735
ribosomal protein S25 (RPS25) pseudogene
2.0000
0.0000
7
ENSG00000257542
OR7E47P
olfactory receptor family 7 subfamily E member 47 pseudogene
1.7925
0.0000
8
ENSG00000257663
novel transcript, antisense to C12orf44
1.7925
0.0000
10
ENSG00000068784
SRBD1
S1 RNA binding domain 1
1.5850
0.0092
63119
ENSG00000283765
novel protein
-1.0000
1.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000283863
MIR3960
microRNA 3960
-1.0000
1.0000
63127
ENSG00000283858
MIR3674
microRNA 3674
-1.0000
1.0000
63126
ENSG00000283848
MIR6872
microRNA 6872
-1.0000
1.0000
63125
ENSG00000283836
MIR6734
microRNA 6734
-1.0000
0.3889
63124
ENSG00000283829
MIR378I
microRNA 378i
-1.0000
0.1076
63123
ENSG00000283815
MIR18A
microRNA 18a
-1.0000
1.0000
63122
ENSG00000283796
MIR6510
microRNA 6510
-1.0000
0.6129
63121
ENSG00000283788
MIR936
microRNA 936
-1.0000
1.0000
63120
ENSG00000283782
novel protein
-1.0000
1.0000
63119
ENSG00000283765
novel protein
-1.0000
1.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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