SHOGoiN Cell Methylome: GSM2481583

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481583


Profile download
7180101000000000000000-755Sequence Read ArchiveSRP074598SRP074598_M56Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeGV oocyteHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000124193 SRSF6 serine and arginine rich splicing factor 6 2.2224 0.0000
2 ENSG00000206998 NA 2.2224 0.0000
3 ENSG00000100271 TTLL1 tubulin tyrosine ligase like 1 2.0000 0.0000
4 ENSG00000152620 NADK2 NAD kinase 2, mitochondrial 2.0000 0.0000
5 ENSG00000233491 novel pseudogene containing cadherin repeats 2.0000 0.0009
6 ENSG00000234735 ribosomal protein S25 (RPS25) pseudogene 2.0000 0.0000
7 ENSG00000257542 OR7E47P olfactory receptor family 7 subfamily E member 47 pseudogene 1.7925 0.0000
8 ENSG00000257663 novel transcript, antisense to C12orf44 1.7925 0.0000
10 ENSG00000068784 SRBD1 S1 RNA binding domain 1 1.5850 0.0092
63332 ENSG00000162241 SLC25A45 solute carrier family 25 member 45 -1.1678 0.6752

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000176887 SOX11 SRY-box 11 -1.1887 0.4974
63340 ENSG00000249158 PCDHA11 protocadherin alpha 11 -1.1876 0.0017
63339 ENSG00000147804 SLC39A4 solute carrier family 39 member 4 -1.1837 0.0001
63338 ENSG00000130595 TNNT3 troponin T3, fast skeletal type -1.1786 1.0000
63337 ENSG00000233469 ST6GALNAC4P1 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 4 pseudogene 1 -1.1781 1.0000
63336 ENSG00000199837 RNA5SP71 RNA, 5S ribosomal pseudogene 71 -1.1755 0.6282
63335 ENSG00000157060 SHCBP1L SHC binding and spindle associated 1 like -1.1755 0.6282
63334 ENSG00000100364 KIAA0930 KIAA0930 -1.1755 0.6282
63333 ENSG00000177839 PCDHB9 protocadherin beta 9 -1.1733 0.0452
63332 ENSG00000162241 SLC25A45 solute carrier family 25 member 45 -1.1678 0.6752

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...