SHOGoiN Cell Methylome: GSM2481584
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481584 Profile download | 7180101000000000000000-755 | Sequence Read Archive | SRP074598 | SRP074598_M57 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | GV oocyte | Human | Genitalia | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000143520 | FLG2 | filaggrin family member 2 | 2.0000 | 0.0002 |
| 2 | ENSG00000174021 | GNG5 | G protein subunit gamma 5 | 2.0000 | 0.0000 |
| 3 | ENSG00000234022 | novel transcript | 2.0000 | 0.0000 | |
| 4 | ENSG00000236427 | novel transcript | 2.0000 | 0.0002 | |
| 5 | ENSG00000248468 | novel transcript | 2.0000 | 0.0000 | |
| 6 | ENSG00000267501 | novel transcript | 2.0000 | 0.0000 | |
| 7 | ENSG00000275350 | tubulin, beta 3 class III (TUBB3) pseudogene | 2.0000 | 0.0002 | |
| 8 | ENSG00000017260 | ATP2C1 | ATPase secretory pathway Ca2+ transporting 1 | 1.8813 | 0.0000 |
| 9 | ENSG00000250592 | novel transcript, antisense to ATP2C1 | 1.8813 | 0.0000 | |
| 10 | ENSG00000251579 | pseudogene similar to part of makorin ring finger protein 1 | 1.8813 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000252053 | RNU6-1101P | RNA, U6 small nuclear 1101, pseudogene | -1.3510 | 1.0000 |
| 63340 | ENSG00000248949 | novel transcript | -1.3510 | 1.0000 | |
| 63339 | ENSG00000186818 | LILRB4 | leukocyte immunoglobulin like receptor B4 | -1.3510 | 1.0000 |
| 63338 | ENSG00000125462 | C1orf61 | chromosome 1 open reading frame 61 | -1.3510 | 1.0000 |
| 63337 | ENSG00000010610 | CD4 | CD4 molecule | -1.3510 | 1.0000 |
| 63336 | ENSG00000182888 | ribosomal protein S27a (RPS27A) pseudogene | -1.3509 | 0.0006 | |
| 63335 | ENSG00000177822 | TENM3-AS1 | TENM3 antisense RNA 1 | -1.3493 | 0.2689 |
| 63334 | ENSG00000170175 | CHRNB1 | cholinergic receptor nicotinic beta 1 subunit | -1.3419 | 0.8012 |
| 63333 | ENSG00000237338 | FTCD-AS1 | FTCD antisense RNA 1 | -1.3412 | 0.6227 |
| 63332 | ENSG00000120075 | HOXB5 | homeobox B5 | -1.3396 | 0.1130 |
