Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
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SHOGoiN Cell Methylome: GSM2481584
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481584
Profile download
7180101000000000000000-755
Sequence Read Archive
SRP074598
SRP074598_M57
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
GV oocyte
Human
Genitalia
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000143520
FLG2
filaggrin family member 2
2.0000
0.0002
2
ENSG00000174021
GNG5
G protein subunit gamma 5
2.0000
0.0000
3
ENSG00000234022
novel transcript
2.0000
0.0000
4
ENSG00000236427
novel transcript
2.0000
0.0002
5
ENSG00000248468
novel transcript
2.0000
0.0000
6
ENSG00000267501
novel transcript
2.0000
0.0000
7
ENSG00000275350
tubulin, beta 3 class III (TUBB3) pseudogene
2.0000
0.0002
8
ENSG00000017260
ATP2C1
ATPase secretory pathway Ca2+ transporting 1
1.8813
0.0000
9
ENSG00000250592
novel transcript, antisense to ATP2C1
1.8813
0.0000
10
ENSG00000251579
pseudogene similar to part of makorin ring finger protein 1
1.8813
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000251915
RNA5SP406
RNA, 5S ribosomal pseudogene 406
-1.2089
0.6227
63127
ENSG00000236651
DLX2-DT
DLX2 divergent transcript
-1.2089
0.2721
63126
ENSG00000151650
VENTX
VENT homeobox
-1.2089
0.0223
63125
ENSG00000141391
PRELID3A
PRELI domain containing 3A
-1.2076
0.7255
63124
ENSG00000255415
chromosome 11 open reading frame 2 (C11orf2) pseudogene
-1.2065
0.6364
63123
ENSG00000169184
MN1
MN1 proto-oncogene, transcriptional regulator
-1.2062
0.2064
63122
ENSG00000281348
novel protein
-1.2057
0.1882
63121
ENSG00000179833
SERTAD2
SERTA domain containing 2
-1.2055
0.1150
63120
ENSG00000119973
PRLHR
prolactin releasing hormone receptor
-1.2055
0.5926
63119
ENSG00000114767
RRP9
ribosomal RNA processing 9, U3 small nucleolar RNA binding protein
-1.2047
0.4010
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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