Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481584

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2481584 Profile download	7180101000000000000000-755	Sequence Read Archive	SRP074598	SRP074598_M57	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	GV oocyte	Human	Genitalia	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000143520	FLG2	filaggrin family member 2	2.0000	0.0002
2	ENSG00000174021	GNG5	G protein subunit gamma 5	2.0000	0.0000
3	ENSG00000234022		novel transcript	2.0000	0.0000
4	ENSG00000236427		novel transcript	2.0000	0.0002
5	ENSG00000248468		novel transcript	2.0000	0.0000
6	ENSG00000267501		novel transcript	2.0000	0.0000
7	ENSG00000275350		tubulin, beta 3 class III (TUBB3) pseudogene	2.0000	0.0002
8	ENSG00000017260	ATP2C1	ATPase secretory pathway Ca2+ transporting 1	1.8813	0.0000
9	ENSG00000250592		novel transcript, antisense to ATP2C1	1.8813	0.0000
10	ENSG00000251579		pseudogene similar to part of makorin ring finger protein 1	1.8813	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000251915	RNA5SP406	RNA, 5S ribosomal pseudogene 406	-1.2089	0.6227
63127	ENSG00000236651	DLX2-DT	DLX2 divergent transcript	-1.2089	0.2721
63126	ENSG00000151650	VENTX	VENT homeobox	-1.2089	0.0223
63125	ENSG00000141391	PRELID3A	PRELI domain containing 3A	-1.2076	0.7255
63124	ENSG00000255415		chromosome 11 open reading frame 2 (C11orf2) pseudogene	-1.2065	0.6364
63123	ENSG00000169184	MN1	MN1 proto-oncogene, transcriptional regulator	-1.2062	0.2064
63122	ENSG00000281348		novel protein	-1.2057	0.1882
63121	ENSG00000179833	SERTAD2	SERTA domain containing 2	-1.2055	0.1150
63120	ENSG00000119973	PRLHR	prolactin releasing hormone receptor	-1.2055	0.5926
63119	ENSG00000114767	RRP9	ribosomal RNA processing 9, U3 small nucleolar RNA binding protein	-1.2047	0.4010

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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