SHOGoiN Cell Methylome: GSM2481584

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481584


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7180101000000000000000-755Sequence Read ArchiveSRP074598SRP074598_M57Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeGV oocyteHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000143520 FLG2 filaggrin family member 2 2.0000 0.0002
2 ENSG00000174021 GNG5 G protein subunit gamma 5 2.0000 0.0000
3 ENSG00000234022 novel transcript 2.0000 0.0000
4 ENSG00000236427 novel transcript 2.0000 0.0002
5 ENSG00000248468 novel transcript 2.0000 0.0000
6 ENSG00000267501 novel transcript 2.0000 0.0000
7 ENSG00000275350 tubulin, beta 3 class III (TUBB3) pseudogene 2.0000 0.0002
8 ENSG00000017260 ATP2C1 ATPase secretory pathway Ca2+ transporting 1 1.8813 0.0000
9 ENSG00000250592 novel transcript, antisense to ATP2C1 1.8813 0.0000
10 ENSG00000251579 pseudogene similar to part of makorin ring finger protein 1 1.8813 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000252053 RNU6-1101P RNA, U6 small nuclear 1101, pseudogene -1.3510 1.0000
63340 ENSG00000248949 novel transcript -1.3510 1.0000
63339 ENSG00000186818 LILRB4 leukocyte immunoglobulin like receptor B4 -1.3510 1.0000
63338 ENSG00000125462 C1orf61 chromosome 1 open reading frame 61 -1.3510 1.0000
63337 ENSG00000010610 CD4 CD4 molecule -1.3510 1.0000
63336 ENSG00000182888 ribosomal protein S27a (RPS27A) pseudogene -1.3509 0.0006
63335 ENSG00000177822 TENM3-AS1 TENM3 antisense RNA 1 -1.3493 0.2689
63334 ENSG00000170175 CHRNB1 cholinergic receptor nicotinic beta 1 subunit -1.3419 0.8012
63333 ENSG00000237338 FTCD-AS1 FTCD antisense RNA 1 -1.3412 0.6227
63332 ENSG00000120075 HOXB5 homeobox B5 -1.3396 0.1130

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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