Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481584

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481584


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7180101000000000000000-755Sequence Read ArchiveSRP074598SRP074598_M57Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeGV oocyteHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000143520 FLG2 filaggrin family member 2 2.0000 0.0002
2 ENSG00000174021 GNG5 G protein subunit gamma 5 2.0000 0.0000
3 ENSG00000234022 novel transcript 2.0000 0.0000
4 ENSG00000236427 novel transcript 2.0000 0.0002
5 ENSG00000248468 novel transcript 2.0000 0.0000
6 ENSG00000267501 novel transcript 2.0000 0.0000
7 ENSG00000275350 tubulin, beta 3 class III (TUBB3) pseudogene 2.0000 0.0002
8 ENSG00000017260 ATP2C1 ATPase secretory pathway Ca2+ transporting 1 1.8813 0.0000
9 ENSG00000250592 novel transcript, antisense to ATP2C1 1.8813 0.0000
10 ENSG00000251579 pseudogene similar to part of makorin ring finger protein 1 1.8813 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000251915 RNA5SP406 RNA, 5S ribosomal pseudogene 406 -1.2089 0.6227
63127 ENSG00000236651 DLX2-DT DLX2 divergent transcript -1.2089 0.2721
63126 ENSG00000151650 VENTX VENT homeobox -1.2089 0.0223
63125 ENSG00000141391 PRELID3A PRELI domain containing 3A -1.2076 0.7255
63124 ENSG00000255415 chromosome 11 open reading frame 2 (C11orf2) pseudogene -1.2065 0.6364
63123 ENSG00000169184 MN1 MN1 proto-oncogene, transcriptional regulator -1.2062 0.2064
63122 ENSG00000281348 novel protein -1.2057 0.1882
63121 ENSG00000179833 SERTAD2 SERTA domain containing 2 -1.2055 0.1150
63120 ENSG00000119973 PRLHR prolactin releasing hormone receptor -1.2055 0.5926
63119 ENSG00000114767 RRP9 ribosomal RNA processing 9, U3 small nucleolar RNA binding protein -1.2047 0.4010

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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