SHOGoiN Cell Methylome: GSM2481585

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481585


Profile download
7180101000000000000000-755Sequence Read ArchiveSRP074598SRP074598_M58Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeGV oocyteHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000211513 MIR320E microRNA 320e 2.0000 0.0000
2 ENSG00000267628 novel transcript, antisense to ATP9B 2.0000 0.0000
3 ENSG00000273893 novel transcript, sense intronic to SLC13A3 2.0000 0.0000
4 ENSG00000276791 novel transcript 1.8962 0.0000
5 ENSG00000242325 RPS12P31 ribosomal protein S12 pseudogene 31 1.8306 0.0000
6 ENSG00000254132 MTND6P3 MT-ND6 pseudogene 3 1.7431 0.0000
7 ENSG00000207415 RNU6-1151P RNA, U6 small nuclear 1151, pseudogene 1.6667 0.0000
8 ENSG00000267771 zinc finger protein (ZNF) pseudogene 1.6667 0.0000
9 ENSG00000279039 TEC 1.6667 0.0000
10 ENSG00000279294 novel transcript 1.6667 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000238078 LINC01352 long intergenic non-protein coding RNA 1352 -1.1981 0.6181
63340 ENSG00000204446 C9orf170 chromosome 9 open reading frame 170 -1.1954 0.0459
63339 ENSG00000275866 testis specific protein, Y-linked 1 (TSPY1) pseudogene -1.1950 1.0000
63338 ENSG00000271113 thioredoxin-related transmembrane protein 1 (TMX1) pseudogene -1.1950 1.0000
63337 ENSG00000267868 novel transcript -1.1950 1.0000
63336 ENSG00000264371 MIR4425 microRNA 4425 -1.1950 1.0000
63335 ENSG00000254910 novel transcript -1.1950 0.6265
63334 ENSG00000254909 potassium channel tetramerisation domain containing 6 (KCTD6) pseudogene -1.1950 0.6265
63333 ENSG00000254428 novel transcript, antisense to CCDC84 -1.1950 0.6265
63332 ENSG00000253546 IGLVVI-22-1 immunoglobulin lambda variable (VI)-22-1 (pseudogene) -1.1950 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...