Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481585

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481585


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7180101000000000000000-755Sequence Read ArchiveSRP074598SRP074598_M58Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeGV oocyteHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000211513 MIR320E microRNA 320e 2.0000 0.0000
2 ENSG00000267628 novel transcript, antisense to ATP9B 2.0000 0.0000
3 ENSG00000273893 novel transcript, sense intronic to SLC13A3 2.0000 0.0000
4 ENSG00000276791 novel transcript 1.8962 0.0000
5 ENSG00000242325 RPS12P31 ribosomal protein S12 pseudogene 31 1.8306 0.0000
6 ENSG00000254132 MTND6P3 MT-ND6 pseudogene 3 1.7431 0.0000
7 ENSG00000207415 RNU6-1151P RNA, U6 small nuclear 1151, pseudogene 1.6667 0.0000
8 ENSG00000267771 zinc finger protein (ZNF) pseudogene 1.6667 0.0000
9 ENSG00000279039 TEC 1.6667 0.0000
10 ENSG00000279294 novel transcript 1.6667 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000162065 TBC1D24 TBC1 domain family member 24 -1.0902 0.0008
63127 ENSG00000254941 ring finger protein 181 (RNF181) pseudogene -1.0900 0.0126
63126 ENSG00000245498 novel transcript, antisense to C11orf61 -1.0900 0.0126
63125 ENSG00000160255 ITGB2 integrin subunit beta 2 -1.0900 0.0444
63124 ENSG00000120458 MSANTD2 Myb/SANT DNA binding domain containing 2 -1.0900 0.0126
63123 ENSG00000261652 C15orf65 chromosome 15 open reading frame 65 -1.0891 0.0883
63122 ENSG00000177483 RBM44 RNA binding motif protein 44 -1.0881 0.7661
63121 ENSG00000132205 EMILIN2 elastin microfibril interfacer 2 -1.0881 0.1599
63120 ENSG00000128917 DLL4 delta like canonical Notch ligand 4 -1.0877 0.1632
63119 ENSG00000149451 ADAM33 ADAM metallopeptidase domain 33 -1.0855 0.0619

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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