Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481586

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481586


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5030203000000000000000-761Sequence Read ArchiveSRP074598SRP074598_M59Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMetaphase II oocyteHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000201711 RNU6-1303P RNA, U6 small nuclear 1303, pseudogene 2.8074 0.0000
2 ENSG00000104047 DTWD1 DTW domain containing 1 2.5850 0.0000
3 ENSG00000252290 NA 2.5850 0.0000
4 ENSG00000253093 RNA5SP179 RNA, 5S ribosomal pseudogene 179 2.5850 0.0000
5 ENSG00000255063 RBMXP3 RBMX pseudogene 3 2.5850 0.0000
6 ENSG00000279844 TEC 2.5850 0.0000
7 ENSG00000010017 RANBP9 RAN binding protein 9 2.3219 0.0000
8 ENSG00000072201 LNX1 ligand of numb-protein X 1 2.3219 0.0000
9 ENSG00000101608 MYL12A myosin light chain 12A 2.3219 0.0000
10 ENSG00000159167 STC1 stanniocalcin 1 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000276956 RN7SL769P RNA, 7SL, cytoplasmic 769, pseudogene -1.5850 1.0000
63127 ENSG00000276902 Y RNA -1.5850 1.0000
63126 ENSG00000276764 Metazoan signal recognition particle RNA -1.5850 1.0000
63125 ENSG00000276687 novel transcript -1.5850 1.0000
63124 ENSG00000276650 novel zinc finger protein pseudogene -1.5850 1.0000
63123 ENSG00000276467 zinc finger protein 831 (ZNF831) pseudogene -1.5850 1.0000
63122 ENSG00000276391 galactosidase, beta 1-like (GLB1L) pseudogene -1.5850 1.0000
63121 ENSG00000276147 MIR548AY microRNA 548ay -1.5850 1.0000
63120 ENSG00000276006 REXO1L12P REXO1 like 12, pseudogene -1.5850 1.0000
63119 ENSG00000275646 NA -1.5850 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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