SHOGoiN Cell Methylome: GSM2481586

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481586


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5030203000000000000000-761Sequence Read ArchiveSRP074598SRP074598_M59Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMetaphase II oocyteHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000201711 RNU6-1303P RNA, U6 small nuclear 1303, pseudogene 2.8074 0.0000
2 ENSG00000104047 DTWD1 DTW domain containing 1 2.5850 0.0000
3 ENSG00000252290 NA 2.5850 0.0000
4 ENSG00000253093 RNA5SP179 RNA, 5S ribosomal pseudogene 179 2.5850 0.0000
5 ENSG00000255063 RNA binding motif protein, X-linked (RBMX) pseudogene 2.5850 0.0000
6 ENSG00000279844 TEC 2.5850 0.0000
7 ENSG00000010017 RANBP9 RAN binding protein 9 2.3219 0.0000
8 ENSG00000072201 LNX1 ligand of numb-protein X 1 2.3219 0.0000
9 ENSG00000101608 MYL12A myosin light chain 12A 2.3219 0.0000
10 ENSG00000159167 STC1 stanniocalcin 1 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000018510 AGPS alkylglycerone phosphate synthase -1.6633 0.3191
63340 ENSG00000125827 TMX4 thioredoxin related transmembrane protein 4 -1.6622 1.0000
63339 ENSG00000269802 novel transcript, antisense to CLPP -1.6614 0.0036
63338 ENSG00000125656 CLPP caseinolytic mitochondrial matrix peptidase proteolytic subunit -1.6614 0.0036
63337 ENSG00000173852 DPY19L1 dpy-19 like C-mannosyltransferase 1 -1.6612 0.7004
63336 ENSG00000074590 NUAK1 NUAK family kinase 1 -1.6612 0.0255
63335 ENSG00000284542 MIR3614 microRNA 3614 -1.6610 1.0000
63334 ENSG00000262112 novel transcript, antisense to TRIM25 -1.6610 1.0000
63333 ENSG00000252886 RN7SKP197 RN7SK pseudogene 197 -1.6610 1.0000
63332 ENSG00000230406 ribosomal protein L23 (RPL23) pseudogene -1.6610 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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