SHOGoiN Cell Methylome: GSM2481587
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481587 Profile download | 5030203000000000000000-761 | Sequence Read Archive | SRP074598 | SRP074598_M60 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Metaphase II oocyte | Human | Genitalia | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000270820 | novel transcript, antisense to XPO1 | 2.8074 | 0.0000 | |
| 2 | ENSG00000232493 | RPL12P11 | ribosomal protein L12 pseudogene 11 | 2.5850 | 0.0000 |
| 3 | ENSG00000234568 | BIN2P1 | bridging integrator 2 pseudogene 1 | 2.5850 | 0.0000 |
| 4 | ENSG00000282327 | pseudogene similar to part of glyceraldehyde-3-phosphate dehydrogenase GAPDH | 2.5850 | 0.0000 | |
| 5 | ENSG00000266549 | ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E 1(ATP6V1E1) pseudogene | 2.4534 | 0.0000 | |
| 6 | ENSG00000142233 | NTN5 | netrin 5 | 2.3745 | 0.0000 |
| 7 | ENSG00000114023 | FAM162A | family with sequence similarity 162 member A | 2.3219 | 0.0000 |
| 8 | ENSG00000162813 | BPNT1 | 3'(2'), 5'-bisphosphate nucleotidase 1 | 2.3219 | 0.0000 |
| 9 | ENSG00000179420 | OR6W1P | olfactory receptor family 6 subfamily W member 1 pseudogene | 2.3219 | 0.0000 |
| 10 | ENSG00000214222 | TUBBP2 | tubulin beta pseudogene 2 | 2.3219 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000201635 | NA | -1.6667 | 1.0000 | |
| 63340 | ENSG00000201628 | RNU4-7P | RNA, U4 small nuclear 7, pseudogene | -1.6667 | 1.0000 |
| 63339 | ENSG00000200252 | NA | -1.6667 | 1.0000 | |
| 63338 | ENSG00000198090 | KRTAP4-6 | keratin associated protein 4-6 | -1.6667 | 1.0000 |
| 63337 | ENSG00000006116 | CACNG3 | calcium voltage-gated channel auxiliary subunit gamma 3 | -1.6667 | 1.0000 |
| 63336 | ENSG00000153094 | BCL2L11 | BCL2 like 11 | -1.6664 | 0.1600 |
| 63335 | ENSG00000273587 | SNORA78 | small nucleolar RNA, H/ACA box 78 | -1.6659 | 0.0340 |
| 63334 | ENSG00000255198 | SNHG9 | small nucleolar RNA host gene 9 | -1.6659 | 0.0340 |
| 63333 | ENSG00000270947 | novel transcript | -1.6652 | 1.0000 | |
| 63332 | ENSG00000268717 | BNIP3P33 | BCL2 interacting protein 3 pseudogene 33 | -1.6652 | 1.0000 |
