Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481587

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2481587 Profile download	5030203000000000000000-761	Sequence Read Archive	SRP074598	SRP074598_M60	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Metaphase II oocyte	Human	Genitalia	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000270820	USP34-DT	USP34 divergent transcript	2.8074	0.0000
2	ENSG00000232493	RPL12P11	ribosomal protein L12 pseudogene 11	2.5850	0.0000
3	ENSG00000234568	BIN2P1	bridging integrator 2 pseudogene 1	2.5850	0.0000
4	ENSG00000282327		pseudogene similar to part of glyceraldehyde-3-phosphate dehydrogenase GAPDH	2.5850	0.0000
5	ENSG00000266549	ATP6V1E1P2	ATPase H+ transporting V1 subunit E1 pseudogene 2	2.4534	0.0000
6	ENSG00000142233	NTN5	netrin 5	2.3745	0.0000
7	ENSG00000114023	FAM162A	family with sequence similarity 162 member A	2.3219	0.0000
8	ENSG00000162813	BPNT1	3'(2'), 5'-bisphosphate nucleotidase 1	2.3219	0.0000
9	ENSG00000179420	OR6W1P	olfactory receptor family 6 subfamily W member 1 pseudogene	2.3219	0.0000
10	ENSG00000214222	TUBBP2	tubulin beta pseudogene 2	2.3219	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000276359		Metazoan signal recognition particle RNA	-1.5850	1.0000
63127	ENSG00000276229		NA	-1.5850	0.2690
63126	ENSG00000276115		novel transcript, sense intronic to BICD1	-1.5850	1.0000
63125	ENSG00000275968		NA	-1.5850	1.0000
63124	ENSG00000275816	MIR6500	microRNA 6500	-1.5850	1.0000
63123	ENSG00000275801		SLAM family member 9 (SLAMF9) pseudogene	-1.5850	1.0000
63122	ENSG00000275672		GATM antisense RNA 1	-1.5850	1.0000
63121	ENSG00000275502		NA	-1.5850	1.0000
63120	ENSG00000275291	RNVU1-26	RNA, variant U1 small nuclear 26	-1.5850	1.0000
63119	ENSG00000274964		novel transcript, sense intronic to BICD1	-1.5850	1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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