Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM2481587
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481587
Profile download
5030203000000000000000-761
Sequence Read Archive
SRP074598
SRP074598_M60
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Metaphase II oocyte
Human
Genitalia
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000270820
USP34-DT
USP34 divergent transcript
2.8074
0.0000
2
ENSG00000232493
RPL12P11
ribosomal protein L12 pseudogene 11
2.5850
0.0000
3
ENSG00000234568
BIN2P1
bridging integrator 2 pseudogene 1
2.5850
0.0000
4
ENSG00000282327
pseudogene similar to part of glyceraldehyde-3-phosphate dehydrogenase GAPDH
2.5850
0.0000
5
ENSG00000266549
ATP6V1E1P2
ATPase H+ transporting V1 subunit E1 pseudogene 2
2.4534
0.0000
6
ENSG00000142233
NTN5
netrin 5
2.3745
0.0000
7
ENSG00000114023
FAM162A
family with sequence similarity 162 member A
2.3219
0.0000
8
ENSG00000162813
BPNT1
3'(2'), 5'-bisphosphate nucleotidase 1
2.3219
0.0000
9
ENSG00000179420
OR6W1P
olfactory receptor family 6 subfamily W member 1 pseudogene
2.3219
0.0000
10
ENSG00000214222
TUBBP2
tubulin beta pseudogene 2
2.3219
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000276359
Metazoan signal recognition particle RNA
-1.5850
1.0000
63127
ENSG00000276229
NA
-1.5850
0.2690
63126
ENSG00000276115
novel transcript, sense intronic to BICD1
-1.5850
1.0000
63125
ENSG00000275968
NA
-1.5850
1.0000
63124
ENSG00000275816
MIR6500
microRNA 6500
-1.5850
1.0000
63123
ENSG00000275801
SLAM family member 9 (SLAMF9) pseudogene
-1.5850
1.0000
63122
ENSG00000275672
GATM antisense RNA 1
-1.5850
1.0000
63121
ENSG00000275502
NA
-1.5850
1.0000
63120
ENSG00000275291
RNVU1-26
RNA, variant U1 small nuclear 26
-1.5850
1.0000
63119
ENSG00000274964
novel transcript, sense intronic to BICD1
-1.5850
1.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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