SHOGoiN Cell Methylome: GSM2481587

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481587


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5030203000000000000000-761Sequence Read ArchiveSRP074598SRP074598_M60Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMetaphase II oocyteHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000270820 novel transcript, antisense to XPO1 2.8074 0.0000
2 ENSG00000232493 RPL12P11 ribosomal protein L12 pseudogene 11 2.5850 0.0000
3 ENSG00000234568 BIN2P1 bridging integrator 2 pseudogene 1 2.5850 0.0000
4 ENSG00000282327 pseudogene similar to part of glyceraldehyde-3-phosphate dehydrogenase GAPDH 2.5850 0.0000
5 ENSG00000266549 ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E 1(ATP6V1E1) pseudogene 2.4534 0.0000
6 ENSG00000142233 NTN5 netrin 5 2.3745 0.0000
7 ENSG00000114023 FAM162A family with sequence similarity 162 member A 2.3219 0.0000
8 ENSG00000162813 BPNT1 3'(2'), 5'-bisphosphate nucleotidase 1 2.3219 0.0000
9 ENSG00000179420 OR6W1P olfactory receptor family 6 subfamily W member 1 pseudogene 2.3219 0.0000
10 ENSG00000214222 TUBBP2 tubulin beta pseudogene 2 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000201635 NA -1.6667 1.0000
63340 ENSG00000201628 RNU4-7P RNA, U4 small nuclear 7, pseudogene -1.6667 1.0000
63339 ENSG00000200252 NA -1.6667 1.0000
63338 ENSG00000198090 KRTAP4-6 keratin associated protein 4-6 -1.6667 1.0000
63337 ENSG00000006116 CACNG3 calcium voltage-gated channel auxiliary subunit gamma 3 -1.6667 1.0000
63336 ENSG00000153094 BCL2L11 BCL2 like 11 -1.6664 0.1600
63335 ENSG00000273587 SNORA78 small nucleolar RNA, H/ACA box 78 -1.6659 0.0340
63334 ENSG00000255198 SNHG9 small nucleolar RNA host gene 9 -1.6659 0.0340
63333 ENSG00000270947 novel transcript -1.6652 1.0000
63332 ENSG00000268717 BNIP3P33 BCL2 interacting protein 3 pseudogene 33 -1.6652 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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