Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481587

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481587


Profile download
5030203000000000000000-761Sequence Read ArchiveSRP074598SRP074598_M60Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMetaphase II oocyteHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000270820 USP34-DT USP34 divergent transcript 2.8074 0.0000
2 ENSG00000232493 RPL12P11 ribosomal protein L12 pseudogene 11 2.5850 0.0000
3 ENSG00000234568 BIN2P1 bridging integrator 2 pseudogene 1 2.5850 0.0000
4 ENSG00000282327 pseudogene similar to part of glyceraldehyde-3-phosphate dehydrogenase GAPDH 2.5850 0.0000
5 ENSG00000266549 ATP6V1E1P2 ATPase H+ transporting V1 subunit E1 pseudogene 2 2.4534 0.0000
6 ENSG00000142233 NTN5 netrin 5 2.3745 0.0000
7 ENSG00000114023 FAM162A family with sequence similarity 162 member A 2.3219 0.0000
8 ENSG00000162813 BPNT1 3'(2'), 5'-bisphosphate nucleotidase 1 2.3219 0.0000
9 ENSG00000179420 OR6W1P olfactory receptor family 6 subfamily W member 1 pseudogene 2.3219 0.0000
10 ENSG00000214222 TUBBP2 tubulin beta pseudogene 2 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000276359 Metazoan signal recognition particle RNA -1.5850 1.0000
63127 ENSG00000276229 NA -1.5850 0.2690
63126 ENSG00000276115 novel transcript, sense intronic to BICD1 -1.5850 1.0000
63125 ENSG00000275968 NA -1.5850 1.0000
63124 ENSG00000275816 MIR6500 microRNA 6500 -1.5850 1.0000
63123 ENSG00000275801 SLAM family member 9 (SLAMF9) pseudogene -1.5850 1.0000
63122 ENSG00000275672 GATM antisense RNA 1 -1.5850 1.0000
63121 ENSG00000275502 NA -1.5850 1.0000
63120 ENSG00000275291 RNVU1-26 RNA, variant U1 small nuclear 26 -1.5850 1.0000
63119 ENSG00000274964 novel transcript, sense intronic to BICD1 -1.5850 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...