Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481588

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481588


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5030203000000000000000-761Sequence Read ArchiveSRP074598SRP074598_M61Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMetaphase II oocyteHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000258872 FDPSP3 farnesyl diphosphate synthase pseudogene 3 3.3494 0.0000
2 ENSG00000272507 RNU6-88P RNA, U6 small nuclear 88, pseudogene 3.0000 0.0000
3 ENSG00000099260 PALMD palmdelphin 2.8074 0.0000
4 ENSG00000121022 COPS5 COP9 signalosome subunit 5 2.8074 0.0000
5 ENSG00000260483 ribosomal protein S17 (RPS17) pseudogene 2.7974 0.0000
6 ENSG00000173966 COMM domain containing 5 (COMMD5) pseudogene 2.5850 0.0000
7 ENSG00000222370 SNORA36B small nucleolar RNA, H/ACA box 36B 2.5850 0.0000
8 ENSG00000225822 UBXN7-AS1 UBXN7 antisense RNA 1 2.5850 0.0000
9 ENSG00000227698 novel transcript 2.5850 0.0000
10 ENSG00000248684 BIN2P2 bridging integrator 2 pseudogene 2 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000100399 CHADL chondroadherin like -1.8653 0.0173
63127 ENSG00000267336 EIF4A2P1 eukaryotic translation initiation factor 4A2 pseudogene 1 -1.8642 0.0936
63126 ENSG00000272862 novel transcript -1.8635 0.0649
63125 ENSG00000125533 BHLHE23 basic helix-loop-helix family member e23 -1.8630 0.0000
63124 ENSG00000077080 ACTL6B actin like 6B -1.8623 0.5270
63123 ENSG00000237732 CT75 cancer/testis associated transcript 75 -1.8621 0.0416
63122 ENSG00000277358 glyceraldehyde-3-phosphate dehydrogenase (GAPDH) pseudogene -1.8617 1.0000
63121 ENSG00000271818 RN7SKP4 RN7SK pseudogene 4 -1.8617 1.0000
63120 ENSG00000244107 RN7SL250P RNA, 7SL, cytoplasmic 250, pseudogene -1.8617 1.0000
63119 ENSG00000228653 HNRNPCP7 heterogeneous nuclear ribonucleoprotein C pseudogene 7 -1.8617 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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