SHOGoiN Cell Methylome: GSM2481588

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481588


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5030203000000000000000-761Sequence Read ArchiveSRP074598SRP074598_M61Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMetaphase II oocyteHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000258872 FDPSP3 farnesyl diphosphate synthase pseudogene 3 3.3494 0.0000
2 ENSG00000272507 RNU6-88P RNA, U6 small nuclear 88, pseudogene 3.0000 0.0000
3 ENSG00000099260 PALMD palmdelphin 2.8074 0.0000
4 ENSG00000121022 COPS5 COP9 signalosome subunit 5 2.8074 0.0000
5 ENSG00000260483 ribosomal protein S17 (RPS17) pseudogene 2.7974 0.0000
6 ENSG00000173966 COMM domain containing 5 (COMMD5) pseudogene 2.5850 0.0000
7 ENSG00000222370 SNORA36B small nucleolar RNA, H/ACA box 36B 2.5850 0.0000
8 ENSG00000225822 UBXN7-AS1 UBXN7 antisense RNA 1 2.5850 0.0000
9 ENSG00000227698 novel transcript 2.5850 0.0000
10 ENSG00000248684 BIN2P2 bridging integrator 2 pseudogene 2 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000182103 FAM181B family with sequence similarity 181 member B -1.9870 0.0009
63340 ENSG00000264825 novel transcript -1.9869 0.0016
63339 ENSG00000250887 novel transcript -1.9820 0.0347
63338 ENSG00000259647 novel transcript -1.9820 0.0068
63337 ENSG00000113273 ARSB arylsulfatase B -1.9819 0.0021
63336 ENSG00000188883 KLRG2 killer cell lectin like receptor G2 -1.9817 0.9320
63335 ENSG00000071189 SNX13 sorting nexin 13 -1.9803 0.0002
63334 ENSG00000170775 GPR37 G protein-coupled receptor 37 -1.9797 0.0030
63333 ENSG00000261342 novel transcript -1.9757 0.0057
63332 ENSG00000241651 ribosomal protein L15 (RPL15) pseudogene -1.9752 0.0174

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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