Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM2481588
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481588
Profile download
5030203000000000000000-761
Sequence Read Archive
SRP074598
SRP074598_M61
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Metaphase II oocyte
Human
Genitalia
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000258872
FDPSP3
farnesyl diphosphate synthase pseudogene 3
3.3494
0.0000
2
ENSG00000272507
RNU6-88P
RNA, U6 small nuclear 88, pseudogene
3.0000
0.0000
3
ENSG00000099260
PALMD
palmdelphin
2.8074
0.0000
4
ENSG00000121022
COPS5
COP9 signalosome subunit 5
2.8074
0.0000
5
ENSG00000260483
ribosomal protein S17 (RPS17) pseudogene
2.7974
0.0000
6
ENSG00000173966
COMM domain containing 5 (COMMD5) pseudogene
2.5850
0.0000
7
ENSG00000222370
SNORA36B
small nucleolar RNA, H/ACA box 36B
2.5850
0.0000
8
ENSG00000225822
UBXN7-AS1
UBXN7 antisense RNA 1
2.5850
0.0000
9
ENSG00000227698
novel transcript
2.5850
0.0000
10
ENSG00000248684
BIN2P2
bridging integrator 2 pseudogene 2
2.5850
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000100399
CHADL
chondroadherin like
-1.8653
0.0173
63127
ENSG00000267336
EIF4A2P1
eukaryotic translation initiation factor 4A2 pseudogene 1
-1.8642
0.0936
63126
ENSG00000272862
novel transcript
-1.8635
0.0649
63125
ENSG00000125533
BHLHE23
basic helix-loop-helix family member e23
-1.8630
0.0000
63124
ENSG00000077080
ACTL6B
actin like 6B
-1.8623
0.5270
63123
ENSG00000237732
CT75
cancer/testis associated transcript 75
-1.8621
0.0416
63122
ENSG00000277358
glyceraldehyde-3-phosphate dehydrogenase (GAPDH) pseudogene
-1.8617
1.0000
63121
ENSG00000271818
RN7SKP4
RN7SK pseudogene 4
-1.8617
1.0000
63120
ENSG00000244107
RN7SL250P
RNA, 7SL, cytoplasmic 250, pseudogene
-1.8617
1.0000
63119
ENSG00000228653
HNRNPCP7
heterogeneous nuclear ribonucleoprotein C pseudogene 7
-1.8617
1.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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