Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481588

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2481588 Profile download	5030203000000000000000-761	Sequence Read Archive	SRP074598	SRP074598_M61	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Metaphase II oocyte	Human	Genitalia	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000258872	FDPSP3	farnesyl diphosphate synthase pseudogene 3	3.3494	0.0000
2	ENSG00000272507	RNU6-88P	RNA, U6 small nuclear 88, pseudogene	3.0000	0.0000
3	ENSG00000099260	PALMD	palmdelphin	2.8074	0.0000
4	ENSG00000121022	COPS5	COP9 signalosome subunit 5	2.8074	0.0000
5	ENSG00000260483		ribosomal protein S17 (RPS17) pseudogene	2.7974	0.0000
6	ENSG00000173966		COMM domain containing 5 (COMMD5) pseudogene	2.5850	0.0000
7	ENSG00000222370	SNORA36B	small nucleolar RNA, H/ACA box 36B	2.5850	0.0000
8	ENSG00000225822	UBXN7-AS1	UBXN7 antisense RNA 1	2.5850	0.0000
9	ENSG00000227698		novel transcript	2.5850	0.0000
10	ENSG00000248684	BIN2P2	bridging integrator 2 pseudogene 2	2.5850	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000100399	CHADL	chondroadherin like	-1.8653	0.0173
63127	ENSG00000267336	EIF4A2P1	eukaryotic translation initiation factor 4A2 pseudogene 1	-1.8642	0.0936
63126	ENSG00000272862		novel transcript	-1.8635	0.0649
63125	ENSG00000125533	BHLHE23	basic helix-loop-helix family member e23	-1.8630	0.0000
63124	ENSG00000077080	ACTL6B	actin like 6B	-1.8623	0.5270
63123	ENSG00000237732	CT75	cancer/testis associated transcript 75	-1.8621	0.0416
63122	ENSG00000277358		glyceraldehyde-3-phosphate dehydrogenase (GAPDH) pseudogene	-1.8617	1.0000
63121	ENSG00000271818	RN7SKP4	RN7SK pseudogene 4	-1.8617	1.0000
63120	ENSG00000244107	RN7SL250P	RNA, 7SL, cytoplasmic 250, pseudogene	-1.8617	1.0000
63119	ENSG00000228653	HNRNPCP7	heterogeneous nuclear ribonucleoprotein C pseudogene 7	-1.8617	1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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