SHOGoiN Cell Methylome: GSM2481588
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481588 Profile download | 5030203000000000000000-761 | Sequence Read Archive | SRP074598 | SRP074598_M61 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Metaphase II oocyte | Human | Genitalia | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000258872 | FDPSP3 | farnesyl diphosphate synthase pseudogene 3 | 3.3494 | 0.0000 |
| 2 | ENSG00000272507 | RNU6-88P | RNA, U6 small nuclear 88, pseudogene | 3.0000 | 0.0000 |
| 3 | ENSG00000099260 | PALMD | palmdelphin | 2.8074 | 0.0000 |
| 4 | ENSG00000121022 | COPS5 | COP9 signalosome subunit 5 | 2.8074 | 0.0000 |
| 5 | ENSG00000260483 | ribosomal protein S17 (RPS17) pseudogene | 2.7974 | 0.0000 | |
| 6 | ENSG00000173966 | COMM domain containing 5 (COMMD5) pseudogene | 2.5850 | 0.0000 | |
| 7 | ENSG00000222370 | SNORA36B | small nucleolar RNA, H/ACA box 36B | 2.5850 | 0.0000 |
| 8 | ENSG00000225822 | UBXN7-AS1 | UBXN7 antisense RNA 1 | 2.5850 | 0.0000 |
| 9 | ENSG00000227698 | novel transcript | 2.5850 | 0.0000 | |
| 10 | ENSG00000248684 | BIN2P2 | bridging integrator 2 pseudogene 2 | 2.5850 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000182103 | FAM181B | family with sequence similarity 181 member B | -1.9870 | 0.0009 |
| 63340 | ENSG00000264825 | novel transcript | -1.9869 | 0.0016 | |
| 63339 | ENSG00000250887 | novel transcript | -1.9820 | 0.0347 | |
| 63338 | ENSG00000259647 | novel transcript | -1.9820 | 0.0068 | |
| 63337 | ENSG00000113273 | ARSB | arylsulfatase B | -1.9819 | 0.0021 |
| 63336 | ENSG00000188883 | KLRG2 | killer cell lectin like receptor G2 | -1.9817 | 0.9320 |
| 63335 | ENSG00000071189 | SNX13 | sorting nexin 13 | -1.9803 | 0.0002 |
| 63334 | ENSG00000170775 | GPR37 | G protein-coupled receptor 37 | -1.9797 | 0.0030 |
| 63333 | ENSG00000261342 | novel transcript | -1.9757 | 0.0057 | |
| 63332 | ENSG00000241651 | ribosomal protein L15 (RPL15) pseudogene | -1.9752 | 0.0174 |
