Human Omics database for
the Generation of iPS and Normal Cells
Release notes
Statistics
Document manuals
FAQ
All Modules
Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM2481589
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481589
Profile download
5030203000000000000000-761
Sequence Read Archive
SRP074598
SRP074598_M62
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Metaphase II oocyte
Human
Genitalia
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000260257
novel transcript
2.5850
0.0000
2
ENSG00000260536
novel transcript, antisense to MAPRE1
2.5850
0.0000
3
ENSG00000275091
novel transcript, antisense to RFX1
2.5850
0.0000
4
ENSG00000213693
SEC14L1P1
SEC14 like 1 pseudogene 1
2.4387
0.0000
5
ENSG00000236295
novel transcript
2.3900
0.0000
6
ENSG00000186082
KRT18P14
keratin 18 pseudogene 14
2.3370
0.0000
7
ENSG00000144451
SPAG16
sperm associated antigen 16
2.3219
0.0000
8
ENSG00000165792
METTL17
methyltransferase like 17
2.3219
0.0000
9
ENSG00000199977
Small nucleolar RNA SNORA73 family
2.3219
0.0000
10
ENSG00000201157
Small nucleolar RNA SNORA62/SNORA6 family
2.3219
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000258018
LINC02457
long intergenic non-protein coding RNA 2457
-1.7187
0.3717
63127
ENSG00000101190
TCFL5
transcription factor like 5
-1.7184
0.1133
63126
ENSG00000259294
novel transcript, antisense to CUX1
-1.7182
0.0073
63123
ENSG00000178130
FAM27E5
family with sequence similarity E5
-1.7170
1.0000
63122
ENSG00000149743
TRPT1
tRNA phosphotransferase 1
-1.7170
1.0000
63121
ENSG00000266389
PIK3R5-DT
PIK3R5 divergent transcript
-1.7168
0.0013
63120
ENSG00000206811
SNORA10
small nucleolar RNA, H/ACA box 10
-1.7159
0.6312
63119
ENSG00000183783
KCTD8
potassium channel tetramerization domain containing 8
-1.7153
0.0691
10
ENSG00000201157
Small nucleolar RNA SNORA62/SNORA6 family
2.3219
0.0000
9
ENSG00000199977
Small nucleolar RNA SNORA73 family
2.3219
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
download
Now loading...