Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481589

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2481589 Profile download	5030203000000000000000-761	Sequence Read Archive	SRP074598	SRP074598_M62	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Metaphase II oocyte	Human	Genitalia	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000260257		novel transcript	2.5850	0.0000
2	ENSG00000260536		novel transcript, antisense to MAPRE1	2.5850	0.0000
3	ENSG00000275091		novel transcript, antisense to RFX1	2.5850	0.0000
4	ENSG00000213693	SEC14L1P1	SEC14 like 1 pseudogene 1	2.4387	0.0000
5	ENSG00000236295		novel transcript	2.3900	0.0000
6	ENSG00000186082	KRT18P14	keratin 18 pseudogene 14	2.3370	0.0000
7	ENSG00000144451	SPAG16	sperm associated antigen 16	2.3219	0.0000
8	ENSG00000165792	METTL17	methyltransferase like 17	2.3219	0.0000
9	ENSG00000199977		Small nucleolar RNA SNORA73 family	2.3219	0.0000
10	ENSG00000201157		Small nucleolar RNA SNORA62/SNORA6 family	2.3219	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000258018	LINC02457	long intergenic non-protein coding RNA 2457	-1.7187	0.3717
63127	ENSG00000101190	TCFL5	transcription factor like 5	-1.7184	0.1133
63126	ENSG00000259294		novel transcript, antisense to CUX1	-1.7182	0.0073
63123	ENSG00000178130	FAM27E5	family with sequence similarity E5	-1.7170	1.0000
63122	ENSG00000149743	TRPT1	tRNA phosphotransferase 1	-1.7170	1.0000
63121	ENSG00000266389	PIK3R5-DT	PIK3R5 divergent transcript	-1.7168	0.0013
63120	ENSG00000206811	SNORA10	small nucleolar RNA, H/ACA box 10	-1.7159	0.6312
63119	ENSG00000183783	KCTD8	potassium channel tetramerization domain containing 8	-1.7153	0.0691
10	ENSG00000201157		Small nucleolar RNA SNORA62/SNORA6 family	2.3219	0.0000
9	ENSG00000199977		Small nucleolar RNA SNORA73 family	2.3219	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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