Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481589

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481589


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5030203000000000000000-761Sequence Read ArchiveSRP074598SRP074598_M62Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMetaphase II oocyteHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000260257 novel transcript 2.5850 0.0000
2 ENSG00000260536 novel transcript, antisense to MAPRE1 2.5850 0.0000
3 ENSG00000275091 novel transcript, antisense to RFX1 2.5850 0.0000
4 ENSG00000213693 SEC14L1P1 SEC14 like 1 pseudogene 1 2.4387 0.0000
5 ENSG00000236295 novel transcript 2.3900 0.0000
6 ENSG00000186082 KRT18P14 keratin 18 pseudogene 14 2.3370 0.0000
7 ENSG00000144451 SPAG16 sperm associated antigen 16 2.3219 0.0000
8 ENSG00000165792 METTL17 methyltransferase like 17 2.3219 0.0000
9 ENSG00000199977 Small nucleolar RNA SNORA73 family 2.3219 0.0000
10 ENSG00000201157 Small nucleolar RNA SNORA62/SNORA6 family 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000258018 LINC02457 long intergenic non-protein coding RNA 2457 -1.7187 0.3717
63127 ENSG00000101190 TCFL5 transcription factor like 5 -1.7184 0.1133
63126 ENSG00000259294 novel transcript, antisense to CUX1 -1.7182 0.0073
63123 ENSG00000178130 FAM27E5 family with sequence similarity E5 -1.7170 1.0000
63122 ENSG00000149743 TRPT1 tRNA phosphotransferase 1 -1.7170 1.0000
63121 ENSG00000266389 PIK3R5-DT PIK3R5 divergent transcript -1.7168 0.0013
63120 ENSG00000206811 SNORA10 small nucleolar RNA, H/ACA box 10 -1.7159 0.6312
63119 ENSG00000183783 KCTD8 potassium channel tetramerization domain containing 8 -1.7153 0.0691
10 ENSG00000201157 Small nucleolar RNA SNORA62/SNORA6 family 2.3219 0.0000
9 ENSG00000199977 Small nucleolar RNA SNORA73 family 2.3219 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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