SHOGoiN Cell Methylome: GSM2481589

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481589


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5030203000000000000000-761Sequence Read ArchiveSRP074598SRP074598_M62Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMetaphase II oocyteHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000260257 novel transcript 2.5850 0.0000
2 ENSG00000260536 novel transcript, antisense to MAPRE1 2.5850 0.0000
3 ENSG00000275091 novel transcript, antisense to RFX1 2.5850 0.0000
4 ENSG00000213693 SEC14L1P1 SEC14 like 1 pseudogene 1 2.4387 0.0000
5 ENSG00000236295 novel transcript 2.3900 0.0000
6 ENSG00000186082 KRT18P14 keratin 18 pseudogene 14 2.3370 0.0000
7 ENSG00000144451 SPAG16 sperm associated antigen 16 2.3219 0.0000
8 ENSG00000165792 METTL17 methyltransferase like 17 2.3219 0.0000
9 ENSG00000199977 NA 2.3219 0.0000
10 ENSG00000201157 NA 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000257815 novel transcript -1.8227 0.2626
63340 ENSG00000126821 SGPP1 sphingosine-1-phosphate phosphatase 1 -1.8209 0.2890
63339 ENSG00000271857 novel transcript, antisense to RUNX2 -1.8199 0.4058
63338 ENSG00000270259 DSN1, MIND kinetochore complex component, homolog (S. cerevisiae) (DSN1) pseudogene -1.8198 0.0000
63337 ENSG00000278012 novel transcript, sense intronic to XKR7 -1.8186 0.3717
63336 ENSG00000262155 LINC02175 long intergenic non-protein coding RNA 2175 -1.8182 0.0154
63335 ENSG00000280225 TEC -1.8182 0.6423
63334 ENSG00000260653 novel transcript -1.8182 0.6423
63333 ENSG00000111666 CHPT1 choline phosphotransferase 1 -1.8163 0.0067
63332 ENSG00000169891 REPS2 RALBP1 associated Eps domain containing 2 -1.8158 0.2943

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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