SHOGoiN Cell Methylome: GSM2481589
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481589 Profile download | 5030203000000000000000-761 | Sequence Read Archive | SRP074598 | SRP074598_M62 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Metaphase II oocyte | Human | Genitalia | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000260257 | novel transcript | 2.5850 | 0.0000 | |
| 2 | ENSG00000260536 | novel transcript, antisense to MAPRE1 | 2.5850 | 0.0000 | |
| 3 | ENSG00000275091 | novel transcript, antisense to RFX1 | 2.5850 | 0.0000 | |
| 4 | ENSG00000213693 | SEC14L1P1 | SEC14 like 1 pseudogene 1 | 2.4387 | 0.0000 |
| 5 | ENSG00000236295 | novel transcript | 2.3900 | 0.0000 | |
| 6 | ENSG00000186082 | KRT18P14 | keratin 18 pseudogene 14 | 2.3370 | 0.0000 |
| 7 | ENSG00000144451 | SPAG16 | sperm associated antigen 16 | 2.3219 | 0.0000 |
| 8 | ENSG00000165792 | METTL17 | methyltransferase like 17 | 2.3219 | 0.0000 |
| 9 | ENSG00000199977 | NA | 2.3219 | 0.0000 | |
| 10 | ENSG00000201157 | NA | 2.3219 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000257815 | novel transcript | -1.8227 | 0.2626 | |
| 63340 | ENSG00000126821 | SGPP1 | sphingosine-1-phosphate phosphatase 1 | -1.8209 | 0.2890 |
| 63339 | ENSG00000271857 | novel transcript, antisense to RUNX2 | -1.8199 | 0.4058 | |
| 63338 | ENSG00000270259 | DSN1, MIND kinetochore complex component, homolog (S. cerevisiae) (DSN1) pseudogene | -1.8198 | 0.0000 | |
| 63337 | ENSG00000278012 | novel transcript, sense intronic to XKR7 | -1.8186 | 0.3717 | |
| 63336 | ENSG00000262155 | LINC02175 | long intergenic non-protein coding RNA 2175 | -1.8182 | 0.0154 |
| 63335 | ENSG00000280225 | TEC | -1.8182 | 0.6423 | |
| 63334 | ENSG00000260653 | novel transcript | -1.8182 | 0.6423 | |
| 63333 | ENSG00000111666 | CHPT1 | choline phosphotransferase 1 | -1.8163 | 0.0067 |
| 63332 | ENSG00000169891 | REPS2 | RALBP1 associated Eps domain containing 2 | -1.8158 | 0.2943 |
