Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481590

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481590


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5030203000000000000000-761Sequence Read ArchiveSRP074598SRP074598_M63Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMetaphase II oocyteHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000253584 novel transcript 3.0000 0.0000
2 ENSG00000198034 RPS4X ribosomal protein S4 X-linked 2.5850 0.0000
3 ENSG00000215835 Ewing sarcoma breakpoint region 1 (EWSR1) pseudogene 2.5850 0.0000
4 ENSG00000251003 ZFPM2-AS1 ZFPM2 antisense RNA 1 2.5850 0.0000
5 ENSG00000251609 SETP12 SET pseudogene 12 2.5850 0.0000
6 ENSG00000248483 POU5F2 POU domain class 5, transcription factor 2 2.3585 0.0000
7 ENSG00000272406 novel transcript 2.3585 0.0000
8 ENSG00000201157 Small nucleolar RNA SNORA62/SNORA6 family 2.3219 0.0000
9 ENSG00000206587 RNU6-46P RNA, U6 small nuclear 46, pseudogene 2.3219 0.0000
10 ENSG00000212428 Small nucleolar RNA SNORD115 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000141040 ZNF287 zinc finger protein 287 -1.6601 0.0961
63127 ENSG00000279494 novel transcript -1.6591 0.0032
63125 ENSG00000179873 NLRP11 NLR family pyrin domain containing 11 -1.6585 1.0000
63124 ENSG00000154342 WNT3A Wnt family member 3A -1.6585 0.1157
63123 ENSG00000254887 novel transcript, antisense to POU2F2 -1.6582 1.0000
63122 ENSG00000280800 novel transcript, similar to YY1 associated myogenesis RNA 1 YAM1 -1.6581 0.0000
63121 ENSG00000278233 RNA5-8SN2 RNA, 5.8S ribosomal N2 -1.6581 0.0000
63120 ENSG00000148925 BTBD10 BTB domain containing 10 -1.6563 0.0755
63119 ENSG00000137273 FOXF2 forkhead box F2 -1.6562 0.0043
10 ENSG00000212428 Small nucleolar RNA SNORD115 2.3219 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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