SHOGoiN Cell Methylome: GSM2481590

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481590


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5030203000000000000000-761Sequence Read ArchiveSRP074598SRP074598_M63Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMetaphase II oocyteHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000253584 novel transcript 3.0000 0.0000
2 ENSG00000198034 RPS4X ribosomal protein S4 X-linked 2.5850 0.0000
3 ENSG00000215835 Ewing sarcoma breakpoint region 1 (EWSR1) pseudogene 2.5850 0.0000
4 ENSG00000251003 ZFPM2-AS1 ZFPM2 antisense RNA 1 2.5850 0.0000
5 ENSG00000251609 SETP12 SET pseudogene 12 2.5850 0.0000
6 ENSG00000248483 POU5F2 POU domain class 5, transcription factor 2 2.3585 0.0000
7 ENSG00000272406 novel transcript 2.3585 0.0000
8 ENSG00000201157 NA 2.3219 0.0000
9 ENSG00000206587 RNU6-46P RNA, U6 small nuclear 46, pseudogene 2.3219 0.0000
10 ENSG00000212428 NA 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000237236 family with sequence similarity 27 (FAM27) pseudogene -1.7612 0.1919
63340 ENSG00000231484 family with sequence similarity 182, member A (FAM182A) pseudogene -1.7612 0.1919
63339 ENSG00000231232 family with sequence similarity 27 (FAM27) pseudogene -1.7612 0.1919
63338 ENSG00000223836 family with sequence similarity 27 (FAM27) pseudogene -1.7612 0.1919
63337 ENSG00000248993 novel protein -1.7596 0.6360
63336 ENSG00000101542 CDH20 cadherin 20 -1.7580 0.0927
63335 ENSG00000116251 RPL22 ribosomal protein L22 -1.7578 0.0005
63334 ENSG00000284265 MIR4683 microRNA 4683 -1.7573 0.0000
63333 ENSG00000277234 RNU1-5P RNA, U1 small nuclear 5, pseudogene -1.7566 0.1571
63332 ENSG00000204961 PCDHA9 protocadherin alpha 9 -1.7561 0.0229

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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