Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481591

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481591


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5030203000000000000000-761Sequence Read ArchiveSRP074598SRP074598_M64Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMetaphase II oocyteHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000204149 AGAP6 ArfGAP with GTPase domain, ankyrin repeat and PH domain 6 2.8074 0.0000
2 ENSG00000213250 RBMS2P1 RNA binding motif single stranded interacting protein 2 pseudogene 1 2.8074 0.0000
3 ENSG00000255541 CKS1BP4 CDC28 protein kinase regulatory subunit 1B pseudogene 4 2.8074 0.0000
4 ENSG00000222831 MIR1537 microRNA 1537 2.7267 0.0000
5 ENSG00000202023 Small nucleolar RNA SNORD81 2.5850 0.0000
6 ENSG00000208839 SNORA35 small nucleolar RNA, H/ACA box 35 2.5850 0.0000
7 ENSG00000271227 SREK1IP1P2 SREK1IP1 pseudogene 2 2.5850 0.0000
8 ENSG00000232846 SLC25A6P3 solute carrier family 25 member 6 pseudogene 3 2.4037 0.0000
9 ENSG00000171819 ANGPTL7 angiopoietin like 7 2.3219 0.0000
10 ENSG00000178913 TAF7 TATA-box binding protein associated factor 7 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000222501 RNU4-25P RNA, U4 small nuclear 25, pseudogene -1.6667 0.6038
63127 ENSG00000215456 BCRP4 BCR pseudogene 4 -1.6667 0.6038
63126 ENSG00000214976 VDAC2P1 VDAC2 pseudogene 1 -1.6667 0.2411
63125 ENSG00000213882 CYB5AP4 cytochrome b5 type A pseudogene 4 -1.6667 0.6038
63124 ENSG00000199710 Y RNA -1.6667 0.6038
63123 ENSG00000180139 ACTA2-AS1 ACTA2 antisense RNA 1 -1.6667 0.6038
63122 ENSG00000171135 JAGN1 jagunal homolog 1 -1.6667 0.1031
63121 ENSG00000124549 BTN2A3P butyrophilin subfamily 2 member A3, pseudogene -1.6667 0.6038
63120 ENSG00000123575 FAM199X family with sequence similarity 199, X-linked -1.6666 0.0000
63119 ENSG00000147677 EIF3H eukaryotic translation initiation factor 3 subunit H -1.6664 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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