SHOGoiN Cell Methylome: GSM2481591

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481591


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5030203000000000000000-761Sequence Read ArchiveSRP074598SRP074598_M64Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMetaphase II oocyteHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000204149 AGAP6 ArfGAP with GTPase domain, ankyrin repeat and PH domain 6 2.8074 0.0000
2 ENSG00000213250 RBMS2P1 RNA binding motif single stranded interacting protein 2 pseudogene 1 2.8074 0.0000
3 ENSG00000255541 CDC28 protein kinase regulatory subunit 1B (CKS1B) pseudogene 2.8074 0.0000
4 ENSG00000222831 MIR1537 microRNA 1537 2.7267 0.0000
5 ENSG00000202023 NA 2.5850 0.0000
6 ENSG00000208839 SNORA35 small nucleolar RNA, H/ACA box 35 2.5850 0.0000
7 ENSG00000271227 SREK1-interacting protein 1 (SREK1IP1) pseudogene 2.5850 0.0000
8 ENSG00000232846 SLC25A6P3 solute carrier family 25 member 6 pseudogene 3 2.4037 0.0000
9 ENSG00000171819 ANGPTL7 angiopoietin like 7 2.3219 0.0000
10 ENSG00000178913 TAF7 TATA-box binding protein associated factor 7 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000115539 PDCL3 phosducin like 3 -1.7737 0.1465
63340 ENSG00000245719 novel transcript -1.7736 0.0002
63339 ENSG00000132026 RTBDN retbindin -1.7722 0.0000
63338 ENSG00000281974 TEC -1.7715 0.0000
63337 ENSG00000226581 novel transcript -1.7712 0.0989
63336 ENSG00000147679 UTP23 UTP23 small subunit processome component -1.7710 0.0000
63335 ENSG00000260750 novel transcript -1.7701 0.0000
63334 ENSG00000280800 novel transcript, similar to YY1 associated myogenesis RNA 1 YAM1 -1.7699 0.0000
63333 ENSG00000278233 RNA5-8SN2 RNA, 5.8S ribosomal N2 -1.7699 0.0000
63332 ENSG00000136379 ABHD17C abhydrolase domain containing 17C -1.7696 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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