Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481592

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481592


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7020000000000000000000Sequence Read ArchiveSRP074598SRP074598_M65Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeBlastocystHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000234144 COX6CP13 cytochrome c oxidase subunit 6C pseudogene 13 1.7925 0.0001
2 ENSG00000154719 MRPL39 mitochondrial ribosomal protein L39 1.5850 0.0227
4 ENSG00000183246 RIMBP3C RIMS binding protein 3C 1.5850 0.0227
5 ENSG00000196096 SPAG16-DT SPAG16 divergent transcript 1.5850 0.0000
6 ENSG00000206869 SNORA70F small nucleolar RNA, H/ACA box 70F 1.5850 0.0000
7 ENSG00000212214 SNORA48B small nucleolar RNA, H/ACA box 48B 1.5850 0.0227
8 ENSG00000217929 CICP18 capicua transcriptional repressor pseudogene 18 1.5850 0.0000
9 ENSG00000222352 RN7SKP221 RN7SK pseudogene 221 1.5850 0.0227
10 ENSG00000224134 pseudogene similar to part of mediator complex subunit 12 MED12 1.5850 0.0227
63119 ENSG00000188306 LRRIQ4 leucine rich repeats and IQ motif containing 4 -1.3783 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000162040 HS3ST6 heparan sulfate-glucosamine 3-sulfotransferase 6 -1.3802 0.0000
63127 ENSG00000241853 ribosomal protein L31 (RPL31) pseudogene -1.3799 0.0000
63126 ENSG00000278071 novel transcript -1.3796 0.0000
63125 ENSG00000272980 novel transcript -1.3796 0.0000
63124 ENSG00000282964 novel transcript, sense intronic to PAH -1.3791 0.0001
63123 ENSG00000274695 novel transcript -1.3790 0.0000
63122 ENSG00000266933 MADCAM1-AS1 MADCAM1 antisense RNA 1 -1.3790 0.0000
63121 ENSG00000170185 USP38 ubiquitin specific peptidase 38 -1.3788 0.0000
63120 ENSG00000230778 ANKRD63 ankyrin repeat domain 63 -1.3786 0.0000
63119 ENSG00000188306 LRRIQ4 leucine rich repeats and IQ motif containing 4 -1.3783 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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