SHOGoiN Cell Methylome: GSM2481592

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481592


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7020000000000000000000Sequence Read ArchiveSRP074598SRP074598_M65Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeBlastocystHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000234144 COX6CP13 cytochrome c oxidase subunit 6C pseudogene 13 1.7925 0.0001
2 ENSG00000154719 MRPL39 mitochondrial ribosomal protein L39 1.5850 0.0227
4 ENSG00000183246 RIMBP3C RIMS binding protein 3C 1.5850 0.0227
5 ENSG00000196096 uncharacterized LOC100130451 1.5850 0.0000
6 ENSG00000206869 SNORA70F small nucleolar RNA, H/ACA box 70F 1.5850 0.0000
7 ENSG00000212214 SNORA48B small nucleolar RNA, H/ACA box 48B 1.5850 0.0227
8 ENSG00000217929 CICP18 capicua transcriptional repressor pseudogene 18 1.5850 0.0000
9 ENSG00000222352 RN7SKP221 RN7SK pseudogene 221 1.5850 0.0227
10 ENSG00000224134 pseudogene similar to part of mediator complex subunit 12 MED12 1.5850 0.0227
63332 ENSG00000173673 HES3 hes family bHLH transcription factor 3 -1.4198 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000226124 FTCDNL1 formiminotransferase cyclodeaminase N-terminal like -1.4219 0.0002
63340 ENSG00000134873 CLDN10 claudin 10 -1.4217 0.0000
63339 ENSG00000241357 novel transcript -1.4216 0.0000
63338 ENSG00000124762 CDKN1A cyclin dependent kinase inhibitor 1A -1.4216 0.0000
63337 ENSG00000232160 RAP2C-AS1 RAP2C antisense RNA 1 -1.4214 0.0107
63336 ENSG00000180787 ZFP3 ZFP3 zinc finger protein -1.4214 0.0000
63335 ENSG00000267909 CCDC177 coiled-coil domain containing 177 -1.4214 0.0000
63334 ENSG00000233659 NDUFA5P4 NADH:ubiquinone oxidoreductase subunit A5 pseudogene 4 -1.4210 0.0001
63333 ENSG00000163347 CLDN1 claudin 1 -1.4206 0.0001
63332 ENSG00000173673 HES3 hes family bHLH transcription factor 3 -1.4198 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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