Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481593

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481593


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7020000000000000000000Sequence Read ArchiveSRP074598SRP074598_M66Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeBlastocystHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000135220 UGT2A3 UDP glucuronosyltransferase family 2 member A3 2.0000 0.0024
2 ENSG00000243095 RPL3P10 ribosomal protein L3 pseudogene 10 2.0000 0.0024
3 ENSG00000248442 OR10J7P olfactory receptor family 10 subfamily J member 7 pseudogene 2.0000 0.0024
4 ENSG00000172154 OR8I2 olfactory receptor family 8 subfamily I member 2 1.5850 0.0181
5 ENSG00000230772 VN1R108P vomeronasal 1 receptor 108 pseudogene 1.5850 0.0181
6 ENSG00000231058 MSANTD2P1 Myb/SANT DNA binding domain containing 2 pseudogene 1 1.5850 0.0000
7 ENSG00000231762 novel pseudogene 1.5850 0.0000
8 ENSG00000233300 EIF4A1P1 eukaryotic translation initiation factor 4A1 pseudogene 1 1.5850 0.0181
9 ENSG00000239808 RN7SL255P RNA, 7SL, cytoplasmic 255, pseudogene 1.5850 0.0003
10 ENSG00000241566 IGKV2D-24 immunoglobulin kappa variable 2D-24 (non-functional) 1.5850 0.0181

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000231856 novel transcript -1.3774 0.0024
63127 ENSG00000115392 FANCL FA complementation group L -1.3768 0.0053
63126 ENSG00000135074 ADAM19 ADAM metallopeptidase domain 19 -1.3764 0.0000
63125 ENSG00000064651 SLC12A2 solute carrier family 12 member 2 -1.3761 0.0000
63124 ENSG00000261600 novel transcript -1.3761 0.0000
63123 ENSG00000282317 novel transcript -1.3756 0.0000
63122 ENSG00000236154 novel transcript -1.3754 0.0000
63121 ENSG00000262703 novel transcript, antisense to RMI2 -1.3754 0.0000
63120 ENSG00000180269 GPR139 G protein-coupled receptor 139 -1.3751 0.0000
63119 ENSG00000138075 ABCG5 ATP binding cassette subfamily G member 5 -1.3750 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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