SHOGoiN Cell Methylome: GSM2481593

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481593


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7020000000000000000000Sequence Read ArchiveSRP074598SRP074598_M66Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeBlastocystHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000135220 UGT2A3 UDP glucuronosyltransferase family 2 member A3 2.0000 0.0024
2 ENSG00000243095 RPL3P10 ribosomal protein L3 pseudogene 10 2.0000 0.0024
3 ENSG00000248442 OR10J7P olfactory receptor family 10 subfamily J member 7 pseudogene 2.0000 0.0024
4 ENSG00000172154 OR8I2 olfactory receptor family 8 subfamily I member 2 1.5850 0.0181
5 ENSG00000230772 VN1R108P vomeronasal 1 receptor 108 pseudogene 1.5850 0.0181
6 ENSG00000231058 MSANTD2P1 Myb/SANT DNA binding domain containing 2 pseudogene 1 1.5850 0.0000
7 ENSG00000231762 novel pseudogene 1.5850 0.0000
8 ENSG00000233300 EIF4A1P1 eukaryotic translation initiation factor 4A1 pseudogene 1 1.5850 0.0181
9 ENSG00000239808 RN7SL255P RNA, 7SL, cytoplasmic 255, pseudogene 1.5850 0.0003
10 ENSG00000241566 IGKV2D-24 immunoglobulin kappa variable 2D-24 (non-functional) 1.5850 0.0181

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000165312 OTUD1 OTU deubiquitinase 1 -1.4221 0.0000
63340 ENSG00000248383 PCDHAC1 protocadherin alpha subfamily C, 1 -1.4215 0.0003
63339 ENSG00000266340 novel transcript, antisense RNF135 -1.4214 0.0000
63338 ENSG00000180581 SRP9P1 signal recognition particle 9 pseudogene 1 -1.4204 0.0000
63337 ENSG00000250806 novel transcript -1.4201 0.0003
63336 ENSG00000223138 RNA5SP450 RNA, 5S ribosomal pseudogene 450 -1.4201 0.0000
63335 ENSG00000206181 ELOA2 elongin A2 -1.4200 0.0000
63334 ENSG00000164116 GUCY1A1 guanylate cyclase 1 soluble subunit alpha 1 -1.4197 0.0024
63333 ENSG00000253948 novel transcript -1.4196 0.0025
63332 ENSG00000164983 TMEM65 transmembrane protein 65 -1.4196 0.0001

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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