Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481594

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481594


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7020000000000000000000Sequence Read ArchiveSRP074598SRP074598_M67Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeBlastocystHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000199260 RNU6-874P RNA, U6 small nuclear 874, pseudogene 1.5850 0.0170
2 ENSG00000201015 RNU6-280P RNA, U6 small nuclear 280, pseudogene 1.5850 0.0170
3 ENSG00000222030 LINC01793 long intergenic non-protein coding RNA 1793 1.5850 0.0170
4 ENSG00000223117 RN7SKP296 RN7SK pseudogene 296 1.5850 0.0170
5 ENSG00000232235 CDY3P chromodomain Y-linked 3 pseudogene 1.5850 0.0170
6 ENSG00000235523 novel transcript 1.5850 0.0170
7 ENSG00000236378 novel transcript 1.5850 0.0000
8 ENSG00000244196 PPIAP15 peptidylprolyl isomerase A pseudogene 15 1.5850 0.0170
9 ENSG00000255745 novel transcript 1.5850 0.0170
10 ENSG00000256037 MRPL40P1 mitochondrial ribosomal protein L40 pseudogene 1 1.5850 0.0170

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000174607 UGT8 UDP glycosyltransferase 8 -1.3533 0.0000
63127 ENSG00000181274 FRAT2 FRAT regulator of WNT signaling pathway 2 -1.3532 0.0000
63126 ENSG00000264250 RN7SL835P RNA, 7SL, cytoplasmic 835, pseudogene -1.3531 0.0000
63125 ENSG00000204610 TRIM15 tripartite motif containing 15 -1.3522 0.1524
63124 ENSG00000182674 KCNB2 potassium voltage-gated channel subfamily B member 2 -1.3521 0.0000
63123 ENSG00000224825 RORB-AS1 RORB antisense RNA 1 -1.3521 0.0000
63122 ENSG00000147654 EBAG9 estrogen receptor binding site associated antigen 9 -1.3519 0.0031
63121 ENSG00000213626 LBH LBH regulator of WNT signaling pathway -1.3517 0.0000
63120 ENSG00000255478 novel transcript -1.3517 0.0004
63119 ENSG00000100721 TCL1A TCL1 family AKT coactivator A -1.3516 0.0005

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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