SHOGoiN Cell Methylome: GSM2481594

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481594


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7020000000000000000000Sequence Read ArchiveSRP074598SRP074598_M67Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeBlastocystHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000199260 RNU6-874P RNA, U6 small nuclear 874, pseudogene 1.5850 0.0170
2 ENSG00000201015 RNU6-280P RNA, U6 small nuclear 280, pseudogene 1.5850 0.0170
3 ENSG00000222030 LINC01793 long intergenic non-protein coding RNA 1793 1.5850 0.0170
4 ENSG00000223117 RN7SKP296 RN7SK pseudogene 296 1.5850 0.0170
5 ENSG00000232235 CDY3P chromodomain Y-linked 3 pseudogene 1.5850 0.0170
6 ENSG00000235523 novel transcript 1.5850 0.0170
7 ENSG00000236378 novel transcript 1.5850 0.0000
8 ENSG00000244196 PPIAP15 peptidylprolyl isomerase A pseudogene 15 1.5850 0.0170
9 ENSG00000255745 novel transcript 1.5850 0.0170
10 ENSG00000256037 MRPL40P1 mitochondrial ribosomal protein L40 pseudogene 1 1.5850 0.0170

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000197982 C1orf122 chromosome 1 open reading frame 122 -1.3969 0.0000
63340 ENSG00000241560 ZBTB20-AS1 ZBTB20 antisense RNA 1 -1.3967 0.0000
63339 ENSG00000221093 NA -1.3966 0.0002
63338 ENSG00000237429 novel transcript -1.3964 0.0000
63337 ENSG00000201752 RNU6-119P RNA, U6 small nuclear 119, pseudogene -1.3962 0.6053
63336 ENSG00000119862 LGALSL galectin like -1.3959 0.0028
63335 ENSG00000156017 CARNMT1 carnosine N-methyltransferase 1 -1.3959 0.0001
63334 ENSG00000168779 SHOX2 short stature homeobox 2 -1.3949 0.0000
63333 ENSG00000249104 USP17L17 ubiquitin specific peptidase 17 like family member 17 -1.3949 0.0526
63332 ENSG00000278901 novel transcript, antisense to PCDHA13 -1.3948 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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