SHOGoiN Cell Methylome: GSM2481595

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481595


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7020000000000000000000Sequence Read ArchiveSRP074598SRP074598_M68Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeBlastocystHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000186925 KRTAP19-6 keratin associated protein 19-6 2.0000 0.0041
2 ENSG00000236612 KRTAP19-11P keratin associated protein 19-11, pseudogene 2.0000 0.0041
3 ENSG00000264657 MIR3171 microRNA 3171 2.0000 0.0000
4 ENSG00000270055 novel transcript 2.0000 0.0000
5 ENSG00000258548 LINC00645 long intergenic non-protein coding RNA 645 1.6667 0.0000
6 ENSG00000164841 TMEM74 transmembrane protein 74 1.5850 0.0256
7 ENSG00000181958 OR4A15 olfactory receptor family 4 subfamily A member 15 1.5850 0.0256
8 ENSG00000187900 OR5H7P olfactory receptor family 5 subfamily H member 7 pseudogene 1.5850 0.0256
9 ENSG00000199784 RNU6-1287P RNA, U6 small nuclear 1287, pseudogene 1.5850 0.0000
10 ENSG00000202281 RNA5SP235 RNA, 5S ribosomal pseudogene 235 1.5850 0.0256

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000119973 PRLHR prolactin releasing hormone receptor -1.4062 0.0000
63340 ENSG00000171552 BCL2L1 BCL2 like 1 -1.4060 0.0000
63339 ENSG00000179673 RPRML reprimo like -1.4060 0.0000
63338 ENSG00000224514 LINC00620 long intergenic non-protein coding RNA 620 -1.4054 0.0000
63337 ENSG00000189221 MAOA monoamine oxidase A -1.4051 0.0000
63336 ENSG00000231537 MTCO3P10 MT-CO3 pseudogene 10 -1.4051 0.1537
63335 ENSG00000272341 novel transcript -1.4051 0.0000
63334 ENSG00000244242 IFITM10 interferon induced transmembrane protein 10 -1.4050 0.0000
63333 ENSG00000227412 STK33P1 serine/threonine kinase 33 pseudogene 1 -1.4050 0.0382
63332 ENSG00000204287 HLA-DRA major histocompatibility complex, class II, DR alpha -1.4050 0.0382

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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