Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481595

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481595


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7020000000000000000000Sequence Read ArchiveSRP074598SRP074598_M68Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeBlastocystHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000186925 KRTAP19-6 keratin associated protein 19-6 2.0000 0.0041
2 ENSG00000236612 KRTAP19-11P keratin associated protein 19-11, pseudogene 2.0000 0.0041
3 ENSG00000264657 MIR3171 microRNA 3171 2.0000 0.0000
4 ENSG00000270055 novel transcript 2.0000 0.0000
5 ENSG00000258548 LINC00645 long intergenic non-protein coding RNA 645 1.6667 0.0000
6 ENSG00000164841 TMEM74 transmembrane protein 74 1.5850 0.0256
7 ENSG00000181958 OR4A15 olfactory receptor family 4 subfamily A member 15 1.5850 0.0256
8 ENSG00000187900 OR5H7P olfactory receptor family 5 subfamily H member 7 pseudogene 1.5850 0.0256
9 ENSG00000199784 RNU6-1287P RNA, U6 small nuclear 1287, pseudogene 1.5850 0.0000
10 ENSG00000202281 RNA5SP235 RNA, 5S ribosomal pseudogene 235 1.5850 0.0256

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000177879 AP3S1 adaptor related protein complex 3 subunit sigma 1 -1.3642 0.0000
63127 ENSG00000237610 OR4C50P olfactory receptor family 4 subfamily C member 50 pseudogene -1.3636 0.1599
63126 ENSG00000252322 RN7SKP244 RN7SK pseudogene 244 -1.3634 0.5029
63125 ENSG00000278200 LINC01971 long intergenic non-protein coding RNA 1971 -1.3629 0.0000
63124 ENSG00000275180 novel transcript -1.3625 0.0000
63123 ENSG00000221949 LINC01465 long intergenic non-protein coding RNA 1465 -1.3625 0.0000
63122 ENSG00000199179 MIRLET7I microRNA let-7i -1.3625 0.0000
63121 ENSG00000236847 pseudogene similar to part of a tripartite motif-containing family protein -1.3623 0.1108
63120 ENSG00000213926 MSRB1P1 methionine sulfoxide reductase B1 pseudogene 1 -1.3618 0.0000
63119 ENSG00000283745 MIR196B microRNA 196b -1.3617 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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