Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM2481596
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481596
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP074598
SRP074598_M69
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
ICM
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000225655
novel transcript
2.0000
0.0051
2
ENSG00000175749
EIF3KP1
eukaryotic translation initiation factor 3 subunit K pseudogene 1
1.9914
0.0000
3
ENSG00000264566
MIR23C
microRNA 23c
1.6667
0.0000
4
ENSG00000240579
pseudogene similar to part of CD2 (cytoplasmic tail) binding protein 2 (CD2BP2)
1.6458
0.0000
5
ENSG00000183909
OR4G2P
olfactory receptor family 4 subfamily G member 2 pseudogene
1.5850
0.0294
6
ENSG00000184022
OR2T10
olfactory receptor family 2 subfamily T member 10
1.5850
0.0294
7
ENSG00000198974
MIR30E
microRNA 30e
1.5850
0.0294
8
ENSG00000201602
Y RNA
1.5850
0.0294
9
ENSG00000216813
40S ribosomal protein S12 (RPS12) pseudogene
1.5850
0.0000
10
ENSG00000219253
RPS6P7
ribosomal protein S6 pseudogene 7
1.5850
0.0294
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000143013
LMO4
LIM domain only 4
-1.3642
0.0000
63127
ENSG00000179630
LACC1
laccase domain containing 1
-1.3638
0.0000
63126
ENSG00000250230
novel transcript
-1.3635
0.0000
63125
ENSG00000279964
TEC
-1.3634
0.0000
63124
ENSG00000250919
UGT2B26P
UDP glucuronosyltransferase family 2 member B26, pseudogene
-1.3634
0.5587
63123
ENSG00000250467
PHOX2B-AS1
PHOX2B antisense RNA 1
-1.3633
0.0000
63122
ENSG00000259013
NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa (NDUFA4) pseudogene
-1.3633
0.0000
63121
ENSG00000239840
RPL23AP72
ribosomal protein L23a pseudogene 72
-1.3631
0.0000
63120
ENSG00000253695
novel transcript
-1.3630
0.0000
63119
ENSG00000262096
PCDHB19P
protocadherin beta 19 pseudogene
-1.3628
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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