SHOGoiN Cell Methylome: GSM2481596
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481596 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP074598 | SRP074598_M69 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | ICM | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000225655 | novel transcript | 2.0000 | 0.0051 | |
| 2 | ENSG00000175749 | EIF3KP1 | eukaryotic translation initiation factor 3 subunit K pseudogene 1 | 1.9914 | 0.0000 |
| 3 | ENSG00000264566 | MIR23C | microRNA 23c | 1.6667 | 0.0000 |
| 4 | ENSG00000240579 | pseudogene similar to part of CD2 (cytoplasmic tail) binding protein 2 (CD2BP2) | 1.6458 | 0.0000 | |
| 5 | ENSG00000183909 | OR4G2P | olfactory receptor family 4 subfamily G member 2 pseudogene | 1.5850 | 0.0294 |
| 6 | ENSG00000184022 | OR2T10 | olfactory receptor family 2 subfamily T member 10 | 1.5850 | 0.0294 |
| 7 | ENSG00000198974 | MIR30E | microRNA 30e | 1.5850 | 0.0294 |
| 8 | ENSG00000201602 | NA | 1.5850 | 0.0294 | |
| 9 | ENSG00000216813 | 40S ribosomal protein S12 (RPS12) pseudogene | 1.5850 | 0.0000 | |
| 10 | ENSG00000219253 | RPS6P7 | ribosomal protein S6 pseudogene 7 | 1.5850 | 0.0294 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000254506 | novel pseudogene | -1.4051 | 0.0000 | |
| 63340 | ENSG00000277586 | NEFL | neurofilament light | -1.4050 | 0.0000 |
| 63339 | ENSG00000233871 | DLG5-AS1 | DLG5 antisense RNA 1 | -1.4048 | 0.0000 |
| 63338 | ENSG00000230570 | 1-aminocyclopropane-1-carboxylate synthase pseudogene | -1.4047 | 0.0016 | |
| 63337 | ENSG00000165617 | DACT1 | dishevelled binding antagonist of beta catenin 1 | -1.4041 | 0.0000 |
| 63336 | ENSG00000185155 | MIXL1 | Mix paired-like homeobox | -1.4039 | 0.0000 |
| 63335 | ENSG00000187566 | NHLRC1 | NHL repeat containing E3 ubiquitin protein ligase 1 | -1.4038 | 0.0000 |
| 63334 | ENSG00000223298 | RNY3P8 | RNY3 pseudogene 8 | -1.4037 | 0.0000 |
| 63333 | ENSG00000233672 | RNASEH2B-AS1 | RNASEH2B antisense RNA 1 | -1.4033 | 0.0000 |
| 63332 | ENSG00000239825 | RN7SL549P | RNA, 7SL, cytoplasmic 549, pseudogene | -1.4032 | 0.0000 |
