Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481596

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2481596 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP074598	SRP074598_M69	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	ICM	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000225655		novel transcript	2.0000	0.0051
2	ENSG00000175749	EIF3KP1	eukaryotic translation initiation factor 3 subunit K pseudogene 1	1.9914	0.0000
3	ENSG00000264566	MIR23C	microRNA 23c	1.6667	0.0000
4	ENSG00000240579		pseudogene similar to part of CD2 (cytoplasmic tail) binding protein 2 (CD2BP2)	1.6458	0.0000
5	ENSG00000183909	OR4G2P	olfactory receptor family 4 subfamily G member 2 pseudogene	1.5850	0.0294
6	ENSG00000184022	OR2T10	olfactory receptor family 2 subfamily T member 10	1.5850	0.0294
7	ENSG00000198974	MIR30E	microRNA 30e	1.5850	0.0294
8	ENSG00000201602		Y RNA	1.5850	0.0294
9	ENSG00000216813		40S ribosomal protein S12 (RPS12) pseudogene	1.5850	0.0000
10	ENSG00000219253	RPS6P7	ribosomal protein S6 pseudogene 7	1.5850	0.0294

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000143013	LMO4	LIM domain only 4	-1.3642	0.0000
63127	ENSG00000179630	LACC1	laccase domain containing 1	-1.3638	0.0000
63126	ENSG00000250230		novel transcript	-1.3635	0.0000
63125	ENSG00000279964		TEC	-1.3634	0.0000
63124	ENSG00000250919	UGT2B26P	UDP glucuronosyltransferase family 2 member B26, pseudogene	-1.3634	0.5587
63123	ENSG00000250467	PHOX2B-AS1	PHOX2B antisense RNA 1	-1.3633	0.0000
63122	ENSG00000259013		NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa (NDUFA4) pseudogene	-1.3633	0.0000
63121	ENSG00000239840	RPL23AP72	ribosomal protein L23a pseudogene 72	-1.3631	0.0000
63120	ENSG00000253695		novel transcript	-1.3630	0.0000
63119	ENSG00000262096	PCDHB19P	protocadherin beta 19 pseudogene	-1.3628	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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