SHOGoiN Cell Methylome: GSM2481596

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481596


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M69Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000225655 novel transcript 2.0000 0.0051
2 ENSG00000175749 EIF3KP1 eukaryotic translation initiation factor 3 subunit K pseudogene 1 1.9914 0.0000
3 ENSG00000264566 MIR23C microRNA 23c 1.6667 0.0000
4 ENSG00000240579 pseudogene similar to part of CD2 (cytoplasmic tail) binding protein 2 (CD2BP2) 1.6458 0.0000
5 ENSG00000183909 OR4G2P olfactory receptor family 4 subfamily G member 2 pseudogene 1.5850 0.0294
6 ENSG00000184022 OR2T10 olfactory receptor family 2 subfamily T member 10 1.5850 0.0294
7 ENSG00000198974 MIR30E microRNA 30e 1.5850 0.0294
8 ENSG00000201602 NA 1.5850 0.0294
9 ENSG00000216813 40S ribosomal protein S12 (RPS12) pseudogene 1.5850 0.0000
10 ENSG00000219253 RPS6P7 ribosomal protein S6 pseudogene 7 1.5850 0.0294

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000254506 novel pseudogene -1.4051 0.0000
63340 ENSG00000277586 NEFL neurofilament light -1.4050 0.0000
63339 ENSG00000233871 DLG5-AS1 DLG5 antisense RNA 1 -1.4048 0.0000
63338 ENSG00000230570 1-aminocyclopropane-1-carboxylate synthase pseudogene -1.4047 0.0016
63337 ENSG00000165617 DACT1 dishevelled binding antagonist of beta catenin 1 -1.4041 0.0000
63336 ENSG00000185155 MIXL1 Mix paired-like homeobox -1.4039 0.0000
63335 ENSG00000187566 NHLRC1 NHL repeat containing E3 ubiquitin protein ligase 1 -1.4038 0.0000
63334 ENSG00000223298 RNY3P8 RNY3 pseudogene 8 -1.4037 0.0000
63333 ENSG00000233672 RNASEH2B-AS1 RNASEH2B antisense RNA 1 -1.4033 0.0000
63332 ENSG00000239825 RN7SL549P RNA, 7SL, cytoplasmic 549, pseudogene -1.4032 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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