Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481596

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481596


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M69Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000225655 novel transcript 2.0000 0.0051
2 ENSG00000175749 EIF3KP1 eukaryotic translation initiation factor 3 subunit K pseudogene 1 1.9914 0.0000
3 ENSG00000264566 MIR23C microRNA 23c 1.6667 0.0000
4 ENSG00000240579 pseudogene similar to part of CD2 (cytoplasmic tail) binding protein 2 (CD2BP2) 1.6458 0.0000
5 ENSG00000183909 OR4G2P olfactory receptor family 4 subfamily G member 2 pseudogene 1.5850 0.0294
6 ENSG00000184022 OR2T10 olfactory receptor family 2 subfamily T member 10 1.5850 0.0294
7 ENSG00000198974 MIR30E microRNA 30e 1.5850 0.0294
8 ENSG00000201602 Y RNA 1.5850 0.0294
9 ENSG00000216813 40S ribosomal protein S12 (RPS12) pseudogene 1.5850 0.0000
10 ENSG00000219253 RPS6P7 ribosomal protein S6 pseudogene 7 1.5850 0.0294

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000143013 LMO4 LIM domain only 4 -1.3642 0.0000
63127 ENSG00000179630 LACC1 laccase domain containing 1 -1.3638 0.0000
63126 ENSG00000250230 novel transcript -1.3635 0.0000
63125 ENSG00000279964 TEC -1.3634 0.0000
63124 ENSG00000250919 UGT2B26P UDP glucuronosyltransferase family 2 member B26, pseudogene -1.3634 0.5587
63123 ENSG00000250467 PHOX2B-AS1 PHOX2B antisense RNA 1 -1.3633 0.0000
63122 ENSG00000259013 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa (NDUFA4) pseudogene -1.3633 0.0000
63121 ENSG00000239840 RPL23AP72 ribosomal protein L23a pseudogene 72 -1.3631 0.0000
63120 ENSG00000253695 novel transcript -1.3630 0.0000
63119 ENSG00000262096 PCDHB19P protocadherin beta 19 pseudogene -1.3628 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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