SHOGoiN Cell Methylome: GSM2481597

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481597


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M70Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000199319 RN7SKP25 RN7SK pseudogene 25 2.5850 0.0000
2 ENSG00000212410 RNU6-932P RNA, U6 small nuclear 932, pseudogene 2.5850 0.0001
3 ENSG00000231633 LINC00283 long intergenic non-protein coding RNA 283 2.3219 0.0005
4 ENSG00000241963 RN7SL655P RNA, 7SL, cytoplasmic 655, pseudogene 2.0763 0.0000
5 ENSG00000172139 SLC9C1 solute carrier family 9 member C1 2.0000 0.0000
6 ENSG00000207589 MIR508 microRNA 508 2.0000 0.0035
7 ENSG00000224396 METTL15P3 methyltransferase like 15 pseudogene 3 2.0000 0.0035
8 ENSG00000227217 novel transcript 2.0000 0.0035
9 ENSG00000229487 ALG13-AS1 ALG13 antisense RNA 1 2.0000 0.0035
10 ENSG00000234385 RCC2P1 regulator of chromosome condensation 2 pseudogene 1 2.0000 0.0035

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000152977 ZIC1 Zic family member 1 -1.6026 0.0000
63340 ENSG00000152952 PLOD2 procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 -1.6019 0.0000
63339 ENSG00000218186 KRT8P43 keratin 8 pseudogene 43 -1.6017 0.0107
63338 ENSG00000213771 KRT8P37 keratin 8 pseudogene 37 -1.6015 0.0122
63337 ENSG00000251882 RNU6-475P RNA, U6 small nuclear 475, pseudogene -1.6007 0.3641
63336 ENSG00000250580 SNRPCP8 small nuclear ribonucleoprotein polypeptide C pseudogene 8 -1.6007 0.0239
63335 ENSG00000196503 ARL9 ADP ribosylation factor like GTPase 9 -1.6003 0.0000
63334 ENSG00000273063 novel transcript -1.6001 0.0000
63333 ENSG00000115392 FANCL FA complementation group L -1.6001 0.0000
63332 ENSG00000263858 MIR4769 microRNA 4769 -1.6000 0.0957

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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