Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481597

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2481597 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP074598	SRP074598_M70	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	ICM	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000199319	RN7SKP25	RN7SK pseudogene 25	2.5850	0.0000
2	ENSG00000212410	RNU6-932P	RNA, U6 small nuclear 932, pseudogene	2.5850	0.0001
4	ENSG00000241963	RN7SL655P	RNA, 7SL, cytoplasmic 655, pseudogene	2.0763	0.0000
5	ENSG00000172139	SLC9C1	solute carrier family 9 member C1	2.0000	0.0000
6	ENSG00000207589	MIR508	microRNA 508	2.0000	0.0035
7	ENSG00000224396	METTL15P3	methyltransferase like 15 pseudogene 3	2.0000	0.0035
8	ENSG00000227217		novel transcript	2.0000	0.0035
9	ENSG00000229487	ALG13-AS1	ALG13 antisense RNA 1	2.0000	0.0035
10	ENSG00000234385	RCC2P1	regulator of chromosome condensation 2 pseudogene 1	2.0000	0.0035
63119	ENSG00000244470		ribosomal protein L6 (RPL6) pseudogene	-1.5850	1.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000248528	LINC02058	long intergenic non-protein coding RNA 2058	-1.5850	0.6002
63127	ENSG00000248477	NAIPP3	NAIP pseudogene 3	-1.5850	0.6002
63126	ENSG00000248396	TOMM22P4	TOMM22 pseudogene 4	-1.5850	1.0000
63125	ENSG00000248362		novel transcript	-1.5850	1.0000
63124	ENSG00000248197	LINC00290	long intergenic non-protein coding RNA 290	-1.5850	1.0000
63123	ENSG00000248148		novel transcript	-1.5850	1.0000
63122	ENSG00000247877		novel transcript	-1.5850	1.0000
63121	ENSG00000246763	RGMB-AS1	RGMB antisense RNA 1	-1.5850	0.0605
63120	ENSG00000244493	SLC9A9-AS2	SLC9A9 antisense RNA 2	-1.5850	1.0000
63119	ENSG00000244470		ribosomal protein L6 (RPL6) pseudogene	-1.5850	1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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