Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481597

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481597


Profile download
7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M70Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000199319 RN7SKP25 RN7SK pseudogene 25 2.5850 0.0000
2 ENSG00000212410 RNU6-932P RNA, U6 small nuclear 932, pseudogene 2.5850 0.0001
4 ENSG00000241963 RN7SL655P RNA, 7SL, cytoplasmic 655, pseudogene 2.0763 0.0000
5 ENSG00000172139 SLC9C1 solute carrier family 9 member C1 2.0000 0.0000
6 ENSG00000207589 MIR508 microRNA 508 2.0000 0.0035
7 ENSG00000224396 METTL15P3 methyltransferase like 15 pseudogene 3 2.0000 0.0035
8 ENSG00000227217 novel transcript 2.0000 0.0035
9 ENSG00000229487 ALG13-AS1 ALG13 antisense RNA 1 2.0000 0.0035
10 ENSG00000234385 RCC2P1 regulator of chromosome condensation 2 pseudogene 1 2.0000 0.0035
63119 ENSG00000244470 ribosomal protein L6 (RPL6) pseudogene -1.5850 1.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000248528 LINC02058 long intergenic non-protein coding RNA 2058 -1.5850 0.6002
63127 ENSG00000248477 NAIPP3 NAIP pseudogene 3 -1.5850 0.6002
63126 ENSG00000248396 TOMM22P4 TOMM22 pseudogene 4 -1.5850 1.0000
63125 ENSG00000248362 novel transcript -1.5850 1.0000
63124 ENSG00000248197 LINC00290 long intergenic non-protein coding RNA 290 -1.5850 1.0000
63123 ENSG00000248148 novel transcript -1.5850 1.0000
63122 ENSG00000247877 novel transcript -1.5850 1.0000
63121 ENSG00000246763 RGMB-AS1 RGMB antisense RNA 1 -1.5850 0.0605
63120 ENSG00000244493 SLC9A9-AS2 SLC9A9 antisense RNA 2 -1.5850 1.0000
63119 ENSG00000244470 ribosomal protein L6 (RPL6) pseudogene -1.5850 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...