SHOGoiN Cell Methylome: GSM2481597
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481597 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP074598 | SRP074598_M70 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | ICM | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000199319 | RN7SKP25 | RN7SK pseudogene 25 | 2.5850 | 0.0000 |
| 2 | ENSG00000212410 | RNU6-932P | RNA, U6 small nuclear 932, pseudogene | 2.5850 | 0.0001 |
| 3 | ENSG00000231633 | LINC00283 | long intergenic non-protein coding RNA 283 | 2.3219 | 0.0005 |
| 4 | ENSG00000241963 | RN7SL655P | RNA, 7SL, cytoplasmic 655, pseudogene | 2.0763 | 0.0000 |
| 5 | ENSG00000172139 | SLC9C1 | solute carrier family 9 member C1 | 2.0000 | 0.0000 |
| 6 | ENSG00000207589 | MIR508 | microRNA 508 | 2.0000 | 0.0035 |
| 7 | ENSG00000224396 | METTL15P3 | methyltransferase like 15 pseudogene 3 | 2.0000 | 0.0035 |
| 8 | ENSG00000227217 | novel transcript | 2.0000 | 0.0035 | |
| 9 | ENSG00000229487 | ALG13-AS1 | ALG13 antisense RNA 1 | 2.0000 | 0.0035 |
| 10 | ENSG00000234385 | RCC2P1 | regulator of chromosome condensation 2 pseudogene 1 | 2.0000 | 0.0035 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000152977 | ZIC1 | Zic family member 1 | -1.6026 | 0.0000 |
| 63340 | ENSG00000152952 | PLOD2 | procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 | -1.6019 | 0.0000 |
| 63339 | ENSG00000218186 | KRT8P43 | keratin 8 pseudogene 43 | -1.6017 | 0.0107 |
| 63338 | ENSG00000213771 | KRT8P37 | keratin 8 pseudogene 37 | -1.6015 | 0.0122 |
| 63337 | ENSG00000251882 | RNU6-475P | RNA, U6 small nuclear 475, pseudogene | -1.6007 | 0.3641 |
| 63336 | ENSG00000250580 | SNRPCP8 | small nuclear ribonucleoprotein polypeptide C pseudogene 8 | -1.6007 | 0.0239 |
| 63335 | ENSG00000196503 | ARL9 | ADP ribosylation factor like GTPase 9 | -1.6003 | 0.0000 |
| 63334 | ENSG00000273063 | novel transcript | -1.6001 | 0.0000 | |
| 63333 | ENSG00000115392 | FANCL | FA complementation group L | -1.6001 | 0.0000 |
| 63332 | ENSG00000263858 | MIR4769 | microRNA 4769 | -1.6000 | 0.0957 |
