Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2481597
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481597
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP074598
SRP074598_M70
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
ICM
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000199319
RN7SKP25
RN7SK pseudogene 25
2.5850
0.0000
2
ENSG00000212410
RNU6-932P
RNA, U6 small nuclear 932, pseudogene
2.5850
0.0001
4
ENSG00000241963
RN7SL655P
RNA, 7SL, cytoplasmic 655, pseudogene
2.0763
0.0000
5
ENSG00000172139
SLC9C1
solute carrier family 9 member C1
2.0000
0.0000
6
ENSG00000207589
MIR508
microRNA 508
2.0000
0.0035
7
ENSG00000224396
METTL15P3
methyltransferase like 15 pseudogene 3
2.0000
0.0035
8
ENSG00000227217
novel transcript
2.0000
0.0035
9
ENSG00000229487
ALG13-AS1
ALG13 antisense RNA 1
2.0000
0.0035
10
ENSG00000234385
RCC2P1
regulator of chromosome condensation 2 pseudogene 1
2.0000
0.0035
63119
ENSG00000244470
ribosomal protein L6 (RPL6) pseudogene
-1.5850
1.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000248528
LINC02058
long intergenic non-protein coding RNA 2058
-1.5850
0.6002
63127
ENSG00000248477
NAIPP3
NAIP pseudogene 3
-1.5850
0.6002
63126
ENSG00000248396
TOMM22P4
TOMM22 pseudogene 4
-1.5850
1.0000
63125
ENSG00000248362
novel transcript
-1.5850
1.0000
63124
ENSG00000248197
LINC00290
long intergenic non-protein coding RNA 290
-1.5850
1.0000
63123
ENSG00000248148
novel transcript
-1.5850
1.0000
63122
ENSG00000247877
novel transcript
-1.5850
1.0000
63121
ENSG00000246763
RGMB-AS1
RGMB antisense RNA 1
-1.5850
0.0605
63120
ENSG00000244493
SLC9A9-AS2
SLC9A9 antisense RNA 2
-1.5850
1.0000
63119
ENSG00000244470
ribosomal protein L6 (RPL6) pseudogene
-1.5850
1.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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