Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481598

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2481598 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP074598	SRP074598_M71	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	ICM	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000224315	RPL7P7	ribosomal protein L7 pseudogene 7	2.4534	0.0000
2	ENSG00000228599	RPL7P52	ribosomal protein L7 pseudogene 52	2.3219	0.0000
3	ENSG00000229816	DDX50P1	DEAD-box helicase 50 pseudogene 1	2.3219	0.0008
4	ENSG00000244363	RPL7P23	ribosomal protein L7 pseudogene 23	2.3219	0.0000
5	ENSG00000249312	ARL2BPP4	ADP ribosylation factor like GTPase 2 binding protein pseudogene 4	2.3219	0.0000
6	ENSG00000269096	CT45A3	cancer/testis antigen family 45 member A3	2.3219	0.0008
7	ENSG00000231544	RSL24D1P11	ribosomal L24 domain containing 1 pseudogene 11	2.2146	0.0000
8	ENSG00000280561		novel transcript, antisense to C10orf137	2.0763	0.0000
9	ENSG00000111537	IFNG	interferon gamma	2.0000	0.0048
10	ENSG00000183206	POTEC	POTE ankyrin domain family member C	2.0000	0.0048

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000248346		novel transcript	-1.5850	1.0000
63127	ENSG00000244544	RN7SL446P	RNA, 7SL, cytoplasmic 446, pseudogene	-1.5850	0.1474
63126	ENSG00000244283	RPL23AP73	ribosomal protein L23a pseudogene 73	-1.5850	1.0000
63125	ENSG00000244281		ret finger protein-like pseudogene	-1.5850	1.0000
63124	ENSG00000244219	TMEM225B	transmembrane protein 225B	-1.5850	1.0000
63123	ENSG00000244089	HMGB1P30	high mobility group box 1 pseudogene 30	-1.5850	1.0000
63122	ENSG00000243861		novel transcript	-1.5850	1.0000
63120	ENSG00000242814		ribosomal protein L28 (RPL28) pseudogene	-1.5850	0.0062
63119	ENSG00000242370	KCNAB1-AS1	KCNAB1 antisense RNA 1	-1.5850	1.0000
10	ENSG00000183206	POTEC	POTE ankyrin domain family member C	2.0000	0.0048

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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