SHOGoiN Cell Methylome: GSM2481598

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481598


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M71Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000224315 RPL7P7 ribosomal protein L7 pseudogene 7 2.4534 0.0000
2 ENSG00000228599 RPL7P52 ribosomal protein L7 pseudogene 52 2.3219 0.0000
3 ENSG00000229816 DDX50P1 DEAD-box helicase 50 pseudogene 1 2.3219 0.0008
4 ENSG00000244363 RPL7P23 ribosomal protein L7 pseudogene 23 2.3219 0.0000
5 ENSG00000249312 ARL2BPP4 ADP ribosylation factor like GTPase 2 binding protein pseudogene 4 2.3219 0.0000
6 ENSG00000269096 CT45A3 cancer/testis antigen family 45 member A3 2.3219 0.0008
7 ENSG00000231544 RSL24D1P11 ribosomal L24 domain containing 1 pseudogene 11 2.2146 0.0000
8 ENSG00000280561 novel transcript, antisense to C10orf137 2.0763 0.0000
9 ENSG00000111537 IFNG interferon gamma 2.0000 0.0048
10 ENSG00000183206 POTEC POTE ankyrin domain family member C 2.0000 0.0048

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000023572 GLRX2 glutaredoxin 2 -1.5925 0.0000
63340 ENSG00000172967 XKR3 XK related 3 -1.5918 0.1106
63339 ENSG00000159650 UROC1 urocanate hydratase 1 -1.5918 0.0236
63338 ENSG00000252749 RNU7-116P RNA, U7 small nuclear 116 pseudogene -1.5909 0.0000
63337 ENSG00000272455 novel transcript -1.5907 0.0000
63336 ENSG00000277957 SENP3-EIF4A1 SENP3-EIF4A1 readthrough (NMD candidate) -1.5905 0.0000
63335 ENSG00000210741 MIR196A1 microRNA 196a-1 -1.5903 0.0000
63334 ENSG00000151131 C12orf45 chromosome 12 open reading frame 45 -1.5901 0.0000
63333 ENSG00000184814 PRR23B proline rich 23B -1.5895 0.0000
63332 ENSG00000269749 novel transcript -1.5893 0.0018

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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