SHOGoiN Cell Methylome: GSM2481598
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481598 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP074598 | SRP074598_M71 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | ICM | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000224315 | RPL7P7 | ribosomal protein L7 pseudogene 7 | 2.4534 | 0.0000 |
| 2 | ENSG00000228599 | RPL7P52 | ribosomal protein L7 pseudogene 52 | 2.3219 | 0.0000 |
| 3 | ENSG00000229816 | DDX50P1 | DEAD-box helicase 50 pseudogene 1 | 2.3219 | 0.0008 |
| 4 | ENSG00000244363 | RPL7P23 | ribosomal protein L7 pseudogene 23 | 2.3219 | 0.0000 |
| 5 | ENSG00000249312 | ARL2BPP4 | ADP ribosylation factor like GTPase 2 binding protein pseudogene 4 | 2.3219 | 0.0000 |
| 6 | ENSG00000269096 | CT45A3 | cancer/testis antigen family 45 member A3 | 2.3219 | 0.0008 |
| 7 | ENSG00000231544 | RSL24D1P11 | ribosomal L24 domain containing 1 pseudogene 11 | 2.2146 | 0.0000 |
| 8 | ENSG00000280561 | novel transcript, antisense to C10orf137 | 2.0763 | 0.0000 | |
| 9 | ENSG00000111537 | IFNG | interferon gamma | 2.0000 | 0.0048 |
| 10 | ENSG00000183206 | POTEC | POTE ankyrin domain family member C | 2.0000 | 0.0048 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000023572 | GLRX2 | glutaredoxin 2 | -1.5925 | 0.0000 |
| 63340 | ENSG00000172967 | XKR3 | XK related 3 | -1.5918 | 0.1106 |
| 63339 | ENSG00000159650 | UROC1 | urocanate hydratase 1 | -1.5918 | 0.0236 |
| 63338 | ENSG00000252749 | RNU7-116P | RNA, U7 small nuclear 116 pseudogene | -1.5909 | 0.0000 |
| 63337 | ENSG00000272455 | novel transcript | -1.5907 | 0.0000 | |
| 63336 | ENSG00000277957 | SENP3-EIF4A1 | SENP3-EIF4A1 readthrough (NMD candidate) | -1.5905 | 0.0000 |
| 63335 | ENSG00000210741 | MIR196A1 | microRNA 196a-1 | -1.5903 | 0.0000 |
| 63334 | ENSG00000151131 | C12orf45 | chromosome 12 open reading frame 45 | -1.5901 | 0.0000 |
| 63333 | ENSG00000184814 | PRR23B | proline rich 23B | -1.5895 | 0.0000 |
| 63332 | ENSG00000269749 | novel transcript | -1.5893 | 0.0018 |
