Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM2481598
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481598
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP074598
SRP074598_M71
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
ICM
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000224315
RPL7P7
ribosomal protein L7 pseudogene 7
2.4534
0.0000
2
ENSG00000228599
RPL7P52
ribosomal protein L7 pseudogene 52
2.3219
0.0000
3
ENSG00000229816
DDX50P1
DEAD-box helicase 50 pseudogene 1
2.3219
0.0008
4
ENSG00000244363
RPL7P23
ribosomal protein L7 pseudogene 23
2.3219
0.0000
5
ENSG00000249312
ARL2BPP4
ADP ribosylation factor like GTPase 2 binding protein pseudogene 4
2.3219
0.0000
6
ENSG00000269096
CT45A3
cancer/testis antigen family 45 member A3
2.3219
0.0008
7
ENSG00000231544
RSL24D1P11
ribosomal L24 domain containing 1 pseudogene 11
2.2146
0.0000
8
ENSG00000280561
novel transcript, antisense to C10orf137
2.0763
0.0000
9
ENSG00000111537
IFNG
interferon gamma
2.0000
0.0048
10
ENSG00000183206
POTEC
POTE ankyrin domain family member C
2.0000
0.0048
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000248346
novel transcript
-1.5850
1.0000
63127
ENSG00000244544
RN7SL446P
RNA, 7SL, cytoplasmic 446, pseudogene
-1.5850
0.1474
63126
ENSG00000244283
RPL23AP73
ribosomal protein L23a pseudogene 73
-1.5850
1.0000
63125
ENSG00000244281
ret finger protein-like pseudogene
-1.5850
1.0000
63124
ENSG00000244219
TMEM225B
transmembrane protein 225B
-1.5850
1.0000
63123
ENSG00000244089
HMGB1P30
high mobility group box 1 pseudogene 30
-1.5850
1.0000
63122
ENSG00000243861
novel transcript
-1.5850
1.0000
63120
ENSG00000242814
ribosomal protein L28 (RPL28) pseudogene
-1.5850
0.0062
63119
ENSG00000242370
KCNAB1-AS1
KCNAB1 antisense RNA 1
-1.5850
1.0000
10
ENSG00000183206
POTEC
POTE ankyrin domain family member C
2.0000
0.0048
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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