SHOGoiN Cell Methylome: GSM2481599

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481599


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M72Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000257748 LINC02281 long intergenic non-protein coding RNA 2281 2.8074 0.0000
2 ENSG00000258038 LINC02327 long intergenic non-protein coding RNA 2327 2.8074 0.0000
3 ENSG00000184675 AMER1 APC membrane recruitment protein 1 2.5850 0.0000
4 ENSG00000181518 OR8D4 olfactory receptor family 8 subfamily D member 4 2.3219 0.0000
5 ENSG00000199487 NA 2.3219 0.0005
6 ENSG00000227905 MED6P1 mediator complex subunit 6 pseudogene 1 2.3219 0.0005
7 ENSG00000249266 MTHFD2P6 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 6 2.3219 0.0005
8 ENSG00000270976 ubiquitin C (UBC) pseudogene 2.3219 0.0005
9 ENSG00000261436 novel transcript 2.0913 0.0000
10 ENSG00000259950 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1 (PPFIA1) pseudogene 2.0763 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000215869 THAP domain containing, apoptosis associated protein 3 (THAP3) pseudogene -1.7925 0.1491
63340 ENSG00000178562 CD28 CD28 molecule -1.7925 1.0000
63339 ENSG00000017427 IGF1 insulin like growth factor 1 -1.7925 1.0000
63338 ENSG00000264462 MIR3648-2 microRNA 3648-2 -1.7922 0.0000
63337 ENSG00000212443 SNORA53 small nucleolar RNA, H/ACA box 53 -1.7919 0.0000
63336 ENSG00000230932 tight junction protein 3 (zona occludens 3) (TJP3) pseudogene -1.7917 0.0000
63335 ENSG00000272189 novel transcript, antisense to MAP7 -1.7916 0.0000
63334 ENSG00000185090 MANEAL mannosidase endo-alpha like -1.7910 0.0000
63333 ENSG00000256263 DDX11L8 DEAD/H-box helicase 11 like 8 -1.7906 0.0000
63332 ENSG00000130193 THEM6 thioesterase superfamily member 6 -1.7900 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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