Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481599

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481599


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M72Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000257748 LINC02281 long intergenic non-protein coding RNA 2281 2.8074 0.0000
2 ENSG00000258038 LINC02327 long intergenic non-protein coding RNA 2327 2.8074 0.0000
3 ENSG00000184675 AMER1 APC membrane recruitment protein 1 2.5850 0.0000
4 ENSG00000181518 OR8D4 olfactory receptor family 8 subfamily D member 4 2.3219 0.0000
5 ENSG00000199487 Y RNA 2.3219 0.0005
6 ENSG00000227905 MED6P1 mediator complex subunit 6 pseudogene 1 2.3219 0.0005
7 ENSG00000249266 MTHFD2P6 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 6 2.3219 0.0005
8 ENSG00000270976 ubiquitin C (UBC) pseudogene 2.3219 0.0005
9 ENSG00000261436 novel transcript 2.0913 0.0000
10 ENSG00000259950 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1 (PPFIA1) pseudogene 2.0763 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000284447 MIR9-2 microRNA 9-2 -1.7197 0.0000
63127 ENSG00000279855 novel transcript, antisense to protocadherin gamma cluster -1.7195 0.0000
63126 ENSG00000245498 novel transcript, antisense to C11orf61 -1.7181 0.0000
63125 ENSG00000165478 HEPACAM hepatic and glial cell adhesion molecule -1.7181 0.0000
63124 ENSG00000248564 novel pseudogene -1.7176 0.0000
63123 ENSG00000234646 novel transcript, sense overlapping SSTR4 -1.7171 0.0000
63122 ENSG00000197734 C14orf178 chromosome 14 open reading frame 178 -1.7170 0.0000
63121 ENSG00000258457 novel transcript, antisense to C14orf93 -1.7165 0.0000
63120 ENSG00000235527 HIPK1-AS1 HIPK1 antisense RNA 1 -1.7161 0.0009
63119 ENSG00000235652 FBXO30-DT FBXO30 divergent transcript -1.7159 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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