SHOGoiN Cell Methylome: GSM2481600

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481600


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M73Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000233716 family with sequence similarity 54, member A (FAM54A) pseudogene 2.4534 0.0000
2 ENSG00000228898 MTCO1P43 MT-CO1 pseudogene 43 2.3219 0.0003
3 ENSG00000230950 MTND2P21 MT-ND2 pseudogene 21 2.3219 0.0003
4 ENSG00000250503 novel transcript 2.3219 0.0003
5 ENSG00000145908 ZNF300 zinc finger protein 300 2.0000 0.0022
6 ENSG00000200162 NA 2.0000 0.0022
7 ENSG00000227514 ribosomal protein L18 (RPL18) pseudogene 2.0000 0.0022
8 ENSG00000228041 eukaryotic translation initiation factor 3 subunit 1 alpha 35kDa (EIF3S1) pseudogene 2.0000 0.0022
9 ENSG00000231633 LINC00283 long intergenic non-protein coding RNA 283 2.0000 0.0000
10 ENSG00000236285 NPM1P8 nucleophosmin 1 pseudogene 8 2.0000 0.0022

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000179542 SLITRK4 SLIT and NTRK like family member 4 -1.7543 0.0000
63340 ENSG00000214367 HAUS3 HAUS augmin like complex subunit 3 -1.7541 0.0000
63339 ENSG00000258072 programmed cell death 2 (PDCD2) pseudogene -1.7541 0.0000
63338 ENSG00000258731 novel transcript, antisense to DDHD1 -1.7539 0.0000
63337 ENSG00000261044 novel transcript, antisense to ARC -1.7538 0.0000
63336 ENSG00000241527 CA15P1 CA15 pseudogene 1 -1.7528 0.0000
63335 ENSG00000187013 C17orf82 chromosome 17 open reading frame 82 -1.7510 0.0000
63334 ENSG00000184292 TACSTD2 tumor associated calcium signal transducer 2 -1.7502 0.0000
63333 ENSG00000282798 TEC -1.7500 0.6281
63332 ENSG00000282542 TEC -1.7500 0.6281

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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