SHOGoiN Cell Methylome: GSM2481601
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481601 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP074598 | SRP074598_M74 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | ICM | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000201708 | RNA5SP359 | RNA, 5S ribosomal pseudogene 359 | 3.3219 | 0.0129 |
| 2 | ENSG00000249751 | ECSCR | endothelial cell surface expressed chemotaxis and apoptosis regulator | 3.2131 | 0.0000 |
| 3 | ENSG00000279686 | novel transcript | 3.2131 | 0.0000 | |
| 4 | ENSG00000235128 | novel pseudogene | 3.1699 | 0.0245 | |
| 5 | ENSG00000108433 | GOSR2 | golgi SNAP receptor complex member 2 | 3.0850 | 0.0000 |
| 6 | ENSG00000195024 | RNU1-15P | RNA, U1 small nuclear 15, pseudogene | 3.0000 | 0.0239 |
| 7 | ENSG00000201044 | RNU6-268P | RNA, U6 small nuclear 268, pseudogene | 3.0000 | 0.0239 |
| 8 | ENSG00000188011 | RTP5 | receptor transporter protein 5 (putative) | 2.9662 | 0.0000 |
| 9 | ENSG00000237341 | SYP-AS1 | SYP antisense RNA 1 | 2.9486 | 0.0000 |
| 10 | ENSG00000141505 | ASGR1 | asialoglycoprotein receptor 1 | 2.8573 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000099337 | KCNK6 | potassium two pore domain channel subfamily K member 6 | -1.4230 | 0.0000 |
| 63340 | ENSG00000049449 | RCN1 | reticulocalbin 1 | -1.4223 | 0.0000 |
| 63339 | ENSG00000151552 | QDPR | quinoid dihydropteridine reductase | -1.4218 | 0.0000 |
| 63338 | ENSG00000225988 | LAMP5-AS1 | LAMP5 antisense RNA 1 | -1.4205 | 0.0000 |
| 63337 | ENSG00000125869 | LAMP5 | lysosomal associated membrane protein family member 5 | -1.4205 | 0.0000 |
| 63336 | ENSG00000081019 | RSBN1 | round spermatid basic protein 1 | -1.4199 | 0.0000 |
| 63335 | ENSG00000270755 | novel transcript | -1.4188 | 0.0000 | |
| 63334 | ENSG00000217261 | POM121L4P | POM121 transmembrane nucleoporin like 4, pseudogene | -1.4181 | 0.0000 |
| 63333 | ENSG00000129514 | FOXA1 | forkhead box A1 | -1.4181 | 0.0000 |
| 63332 | ENSG00000272762 | novel transcript | -1.4175 | 0.0000 |
