Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM2481601
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481601
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP074598
SRP074598_M74
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
ICM
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000201708
RNA5SP359
RNA, 5S ribosomal pseudogene 359
3.3219
0.0129
2
ENSG00000249751
ECSCR
endothelial cell surface expressed chemotaxis and apoptosis regulator
3.2131
0.0000
3
ENSG00000279686
novel transcript
3.2131
0.0000
4
ENSG00000235128
novel pseudogene
3.1699
0.0245
5
ENSG00000108433
GOSR2
golgi SNAP receptor complex member 2
3.0850
0.0000
6
ENSG00000195024
RNU1-15P
RNA, U1 small nuclear 15, pseudogene
3.0000
0.0239
7
ENSG00000201044
RNU6-268P
RNA, U6 small nuclear 268, pseudogene
3.0000
0.0239
8
ENSG00000188011
RTP5
receptor transporter protein 5 (putative)
2.9662
0.0000
9
ENSG00000237341
SYP-AS1
SYP antisense RNA 1
2.9486
0.0000
10
ENSG00000141505
ASGR1
asialoglycoprotein receptor 1
2.8573
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000282912
major histocompatibility complex, class I, F (HLA-F) pseudogene
-1.2839
0.0000
63127
ENSG00000172971
UNC93B3
unc-93 homolog B3 (pseudogene)
-1.2839
0.0000
63126
ENSG00000278696
RN7SL82P
RNA, 7SL, cytoplasmic 82, pseudogene
-1.2825
0.0000
63125
ENSG00000264813
novel protein
-1.2819
0.0000
63124
ENSG00000186280
KDM4D
lysine demethylase 4D
-1.2813
0.0000
63123
ENSG00000258056
novel transcript, antisense to CD63
-1.2797
0.0017
63122
ENSG00000272203
novel transcript
-1.2791
0.0000
63121
ENSG00000266954
novel transcript, antisense C18orf1
-1.2788
0.0000
63120
ENSG00000249148
ribosomal protein L21 (RPL21) pseudogene
-1.2784
0.0000
63119
ENSG00000233611
novel transcript, antisense to ASB18 and GBX2
-1.2782
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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