SHOGoiN Cell Methylome: GSM2481601

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481601


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M74Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000201708 RNA5SP359 RNA, 5S ribosomal pseudogene 359 3.3219 0.0129
2 ENSG00000249751 ECSCR endothelial cell surface expressed chemotaxis and apoptosis regulator 3.2131 0.0000
3 ENSG00000279686 novel transcript 3.2131 0.0000
4 ENSG00000235128 novel pseudogene 3.1699 0.0245
5 ENSG00000108433 GOSR2 golgi SNAP receptor complex member 2 3.0850 0.0000
6 ENSG00000195024 RNU1-15P RNA, U1 small nuclear 15, pseudogene 3.0000 0.0239
7 ENSG00000201044 RNU6-268P RNA, U6 small nuclear 268, pseudogene 3.0000 0.0239
8 ENSG00000188011 RTP5 receptor transporter protein 5 (putative) 2.9662 0.0000
9 ENSG00000237341 SYP-AS1 SYP antisense RNA 1 2.9486 0.0000
10 ENSG00000141505 ASGR1 asialoglycoprotein receptor 1 2.8573 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000099337 KCNK6 potassium two pore domain channel subfamily K member 6 -1.4230 0.0000
63340 ENSG00000049449 RCN1 reticulocalbin 1 -1.4223 0.0000
63339 ENSG00000151552 QDPR quinoid dihydropteridine reductase -1.4218 0.0000
63338 ENSG00000225988 LAMP5-AS1 LAMP5 antisense RNA 1 -1.4205 0.0000
63337 ENSG00000125869 LAMP5 lysosomal associated membrane protein family member 5 -1.4205 0.0000
63336 ENSG00000081019 RSBN1 round spermatid basic protein 1 -1.4199 0.0000
63335 ENSG00000270755 novel transcript -1.4188 0.0000
63334 ENSG00000217261 POM121L4P POM121 transmembrane nucleoporin like 4, pseudogene -1.4181 0.0000
63333 ENSG00000129514 FOXA1 forkhead box A1 -1.4181 0.0000
63332 ENSG00000272762 novel transcript -1.4175 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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