Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481601

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2481601 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP074598	SRP074598_M74	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	ICM	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000201708	RNA5SP359	RNA, 5S ribosomal pseudogene 359	3.3219	0.0129
2	ENSG00000249751	ECSCR	endothelial cell surface expressed chemotaxis and apoptosis regulator	3.2131	0.0000
3	ENSG00000279686		novel transcript	3.2131	0.0000
4	ENSG00000235128		novel pseudogene	3.1699	0.0245
5	ENSG00000108433	GOSR2	golgi SNAP receptor complex member 2	3.0850	0.0000
6	ENSG00000195024	RNU1-15P	RNA, U1 small nuclear 15, pseudogene	3.0000	0.0239
7	ENSG00000201044	RNU6-268P	RNA, U6 small nuclear 268, pseudogene	3.0000	0.0239
8	ENSG00000188011	RTP5	receptor transporter protein 5 (putative)	2.9662	0.0000
9	ENSG00000237341	SYP-AS1	SYP antisense RNA 1	2.9486	0.0000
10	ENSG00000141505	ASGR1	asialoglycoprotein receptor 1	2.8573	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000282912		major histocompatibility complex, class I, F (HLA-F) pseudogene	-1.2839	0.0000
63127	ENSG00000172971	UNC93B3	unc-93 homolog B3 (pseudogene)	-1.2839	0.0000
63126	ENSG00000278696	RN7SL82P	RNA, 7SL, cytoplasmic 82, pseudogene	-1.2825	0.0000
63125	ENSG00000264813		novel protein	-1.2819	0.0000
63124	ENSG00000186280	KDM4D	lysine demethylase 4D	-1.2813	0.0000
63123	ENSG00000258056		novel transcript, antisense to CD63	-1.2797	0.0017
63122	ENSG00000272203		novel transcript	-1.2791	0.0000
63121	ENSG00000266954		novel transcript, antisense C18orf1	-1.2788	0.0000
63120	ENSG00000249148		ribosomal protein L21 (RPL21) pseudogene	-1.2784	0.0000
63119	ENSG00000233611		novel transcript, antisense to ASB18 and GBX2	-1.2782	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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