Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481601

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481601


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M74Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000201708 RNA5SP359 RNA, 5S ribosomal pseudogene 359 3.3219 0.0129
2 ENSG00000249751 ECSCR endothelial cell surface expressed chemotaxis and apoptosis regulator 3.2131 0.0000
3 ENSG00000279686 novel transcript 3.2131 0.0000
4 ENSG00000235128 novel pseudogene 3.1699 0.0245
5 ENSG00000108433 GOSR2 golgi SNAP receptor complex member 2 3.0850 0.0000
6 ENSG00000195024 RNU1-15P RNA, U1 small nuclear 15, pseudogene 3.0000 0.0239
7 ENSG00000201044 RNU6-268P RNA, U6 small nuclear 268, pseudogene 3.0000 0.0239
8 ENSG00000188011 RTP5 receptor transporter protein 5 (putative) 2.9662 0.0000
9 ENSG00000237341 SYP-AS1 SYP antisense RNA 1 2.9486 0.0000
10 ENSG00000141505 ASGR1 asialoglycoprotein receptor 1 2.8573 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000282912 major histocompatibility complex, class I, F (HLA-F) pseudogene -1.2839 0.0000
63127 ENSG00000172971 UNC93B3 unc-93 homolog B3 (pseudogene) -1.2839 0.0000
63126 ENSG00000278696 RN7SL82P RNA, 7SL, cytoplasmic 82, pseudogene -1.2825 0.0000
63125 ENSG00000264813 novel protein -1.2819 0.0000
63124 ENSG00000186280 KDM4D lysine demethylase 4D -1.2813 0.0000
63123 ENSG00000258056 novel transcript, antisense to CD63 -1.2797 0.0017
63122 ENSG00000272203 novel transcript -1.2791 0.0000
63121 ENSG00000266954 novel transcript, antisense C18orf1 -1.2788 0.0000
63120 ENSG00000249148 ribosomal protein L21 (RPL21) pseudogene -1.2784 0.0000
63119 ENSG00000233611 novel transcript, antisense to ASB18 and GBX2 -1.2782 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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