Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481602

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481602


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7020000000000000000000Sequence Read ArchiveSRP074598SRP074598_M75Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeBlastocystHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000255886 novel transcript 2.0000 0.0041
2 ENSG00000223945 ribosomal protein L6 (RPL6) pseudogene 1.7925 0.0001
3 ENSG00000231383 FGF12-AS1 FGF12 antisense RNA 1 1.6887 0.0000
4 ENSG00000112115 IL17A interleukin 17A 1.5850 0.0006
5 ENSG00000200475 RN7SKP162 RN7SK pseudogene 162 1.5850 0.0255
6 ENSG00000204704 OR2W1 olfactory receptor family 2 subfamily W member 1 1.5850 0.0255
7 ENSG00000205609 EIF3CL eukaryotic translation initiation factor 3 subunit C like 1.5850 0.0006
8 ENSG00000206711 Y RNA 1.5850 0.0255
9 ENSG00000226530 novel transcript 1.5850 0.0000
10 ENSG00000228041 EIF3JP1 EIF3J pseudogene 1 1.5850 0.0006

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000149582 TMEM25 transmembrane protein 25 -1.3453 0.0000
63127 ENSG00000108551 RASD1 ras related dexamethasone induced 1 -1.3452 0.0000
63126 ENSG00000254896 OPCML-IT1 OPCML intronic transcript 1 -1.3450 0.0060
63125 ENSG00000264250 RN7SL835P RNA, 7SL, cytoplasmic 835, pseudogene -1.3448 0.0000
63124 ENSG00000255559 ZNF252P-AS1 ZNF252P antisense RNA 1 -1.3447 0.0054
63123 ENSG00000268465 novel protein -1.3444 0.0000
63122 ENSG00000236345 SCAT8 S-phase cancer associated transcript 8 -1.3444 0.4946
63121 ENSG00000279368 TEC -1.3442 0.0018
63120 ENSG00000281741 TEC -1.3440 0.0069
63119 ENSG00000114948 ADAM23 ADAM metallopeptidase domain 23 -1.3435 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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