SHOGoiN Cell Methylome: GSM2481602

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481602


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7020000000000000000000Sequence Read ArchiveSRP074598SRP074598_M75Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeBlastocystHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000255886 novel transcript 2.0000 0.0041
2 ENSG00000223945 ribosomal protein L6 (RPL6) pseudogene 1.7925 0.0001
3 ENSG00000231383 FGF12-AS1 FGF12 antisense RNA 1 1.6887 0.0000
4 ENSG00000112115 IL17A interleukin 17A 1.5850 0.0006
5 ENSG00000200475 RN7SKP162 RN7SK pseudogene 162 1.5850 0.0255
6 ENSG00000204704 OR2W1 olfactory receptor family 2 subfamily W member 1 1.5850 0.0255
7 ENSG00000205609 EIF3CL eukaryotic translation initiation factor 3 subunit C like 1.5850 0.0006
8 ENSG00000206711 NA 1.5850 0.0255
9 ENSG00000226530 novel transcript 1.5850 0.0000
10 ENSG00000228041 eukaryotic translation initiation factor 3 subunit 1 alpha 35kDa (EIF3S1) pseudogene 1.5850 0.0006

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000278922 novel transcript -1.3933 0.0000
63340 ENSG00000251788 RNU5A-7P RNA, U5A small nuclear 7, pseudogene -1.3931 0.0000
63339 ENSG00000261486 RARRES2P9 retinoic acid receptor responder 2 pseudogene 9 -1.3930 0.0017
63338 ENSG00000272192 novel transcript -1.3921 0.0000
63337 ENSG00000153165 RGPD3 RANBP2 like and GRIP domain containing 3 -1.3921 0.0000
63336 ENSG00000198284 NUP210P1 nucleoporin 210 pseudogene 1 -1.3917 0.0000
63335 ENSG00000160013 PTGIR prostaglandin I2 receptor -1.3909 0.0000
63334 ENSG00000260790 novel transcript, antisense to CDR2 -1.3903 0.0000
63333 ENSG00000283744 MIR6755 microRNA 6755 -1.3900 1.0000
63332 ENSG00000277209 RPPH1 ribonuclease P RNA component H1 -1.3900 0.3810

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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