Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481603

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481603


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M76Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000203737 GPR52 G protein-coupled receptor 52 2.3219 0.0004
2 ENSG00000224722 serine/arginine repetitive matrix 1 (SRRM1) pseudogene 2.3219 0.0004
3 ENSG00000124490 CRISP2 cysteine rich secretory protein 2 2.0000 0.0027
4 ENSG00000204904 LINC01545 long intergenic non-protein coding RNA 1545 2.0000 0.0000
5 ENSG00000224431 cytoplasmic linker associated protein 2 (CLASP2) pseudogene 2.0000 0.0000
6 ENSG00000240241 novel transcript 2.0000 0.0027
7 ENSG00000243050 RPL30P10 ribosomal protein L30 pseudogene 10 2.0000 0.0027
8 ENSG00000255569 TRAV1-1 T cell receptor alpha variable 1-1 2.0000 0.0027
9 ENSG00000268545 VN1R107P vomeronasal 1 receptor 107 pseudogene 2.0000 0.0027
10 ENSG00000270868 cytochrome c oxidase subunit VIIb, pseudogene 2.0000 0.0027

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63221 ENSG00000254020 novel transcript -1.5850 1.0000
63220 ENSG00000253958 CLDN23 claudin 23 -1.5850 0.1616
63219 ENSG00000253943 KRT18P37 keratin 18 pseudogene 37 -1.5850 1.0000
63218 ENSG00000253834 novel transcript -1.5850 1.0000
63217 ENSG00000253644 LINC02845 long intergenic non-protein coding RNA 2845 -1.5850 1.0000
63216 ENSG00000253507 novel transcript -1.5850 1.0000
63215 ENSG00000253501 IGKV3D-34 immunoglobulin kappa variable 3D-34 (pseudogene) -1.5850 0.3759
63214 ENSG00000253495 CYCSP23 CYCS pseudogene 23 -1.5850 1.0000
63213 ENSG00000253398 novel transcript -1.5850 1.0000
63212 ENSG00000253106 novel transcript, antisense to TATDN1 -1.5850 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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