Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481604

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481604


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M77Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000153923 CLCA3P chloride channel accessory 3, pseudogene 2.4037 0.0000
2 ENSG00000197786 OR5B17 olfactory receptor family 5 subfamily B member 17 2.3219 0.0000
3 ENSG00000207763 MIR617 microRNA 617 2.3219 0.0006
5 ENSG00000230370 RPL23AP52 ribosomal protein L23a pseudogene 52 2.3219 0.0000
6 ENSG00000270412 novel transcript, antisense to COL15A1 2.0850 0.0000
7 ENSG00000126950 TMEM35A transmembrane protein 35A 2.0000 0.0040
8 ENSG00000181752 OR8K5 olfactory receptor family 8 subfamily K member 5 2.0000 0.0040
9 ENSG00000201398 U8 small nucleolar RNA 2.0000 0.0040
10 ENSG00000201431 RNU6-1277P RNA, U6 small nuclear 1277, pseudogene 2.0000 0.0040
63164 ENSG00000249534 LINC01258 long intergenic non-protein coding RNA 1258 -1.5850 1.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000251352 coiled-coil domain containing 86 (CCDC86) pseudogene -1.5850 1.0000
63172 ENSG00000250587 HPRT1P2 hypoxanthine phosphoribosyltransferase 1 pseudogene 2 -1.5850 1.0000
63171 ENSG00000250524 novel transcript -1.5850 1.0000
63170 ENSG00000250422 tigger transposable element derived 1 (TIGD1) pseudogene -1.5850 1.0000
63169 ENSG00000250207 pseudogene similar to part of pleckstrin homology domain containing, family B (evectins) member 2 (PLEKHB2) -1.5850 0.5987
63168 ENSG00000250137 novel transcript, antisense to PPARGC1A -1.5850 0.5987
63167 ENSG00000249889 ALG1L11P ALG1 like 11, pseudogene -1.5850 0.6214
63166 ENSG00000249842 novel transcript -1.5850 1.0000
63165 ENSG00000249722 novel transcript -1.5850 0.5987
63164 ENSG00000249534 LINC01258 long intergenic non-protein coding RNA 1258 -1.5850 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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