SHOGoiN Cell Methylome: GSM2481604

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481604


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M77Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000153923 CLCA3P chloride channel accessory 3, pseudogene 2.4037 0.0000
2 ENSG00000197786 OR5B17 olfactory receptor family 5 subfamily B member 17 2.3219 0.0000
3 ENSG00000207763 MIR617 microRNA 617 2.3219 0.0006
5 ENSG00000230370 RPL23AP52 ribosomal protein L23a pseudogene 52 2.3219 0.0000
6 ENSG00000270412 novel transcript, antisense to COL15A1 2.0850 0.0000
7 ENSG00000126950 TMEM35A transmembrane protein 35A 2.0000 0.0040
8 ENSG00000181752 OR8K5 olfactory receptor family 8 subfamily K member 5 2.0000 0.0040
9 ENSG00000201398 NA 2.0000 0.0040
10 ENSG00000201431 RNU6-1277P RNA, U6 small nuclear 1277, pseudogene 2.0000 0.0040
63332 ENSG00000270269 IMMP1LP1 inner mitochondrial membrane peptidase subunit 1 pseudogene 1 -1.5850 1.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000270947 novel transcript -1.5850 1.0000
63340 ENSG00000270924 novel IGHV pseudogene -1.5850 1.0000
63338 ENSG00000270690 peroxiredoxin 3 (PRDX3) pseudogene -1.5850 0.2345
63337 ENSG00000270605 novel transcript -1.5850 0.0264
63336 ENSG00000270578 splicing factor 3a, subunit 2, 66kDa, pseudogene -1.5850 1.0000
63335 ENSG00000270469 non-SMC element 4 homolog A (S. cerevisiae), pseudogene -1.5850 0.5987
63334 ENSG00000270443 NOP10 ribonucleoprotein (NOP10) pseudogene -1.5850 1.0000
63333 ENSG00000270289 ribosomal protein L17 (RPL17) pseudogene -1.5850 1.0000
63332 ENSG00000270269 IMMP1LP1 inner mitochondrial membrane peptidase subunit 1 pseudogene 1 -1.5850 1.0000
10 ENSG00000201431 RNU6-1277P RNA, U6 small nuclear 1277, pseudogene 2.0000 0.0040

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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