Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481605

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481605


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M78Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000214759 ribosomal protein L36a (RPL36A) pseudogene 3.3219 0.0000
2 ENSG00000202268 Small nucleolar RNA U3 3.1699 0.0000
3 ENSG00000144488 ESPNL espin like 3.0384 0.0000
4 ENSG00000115827 DCAF17 DDB1 and CUL4 associated factor 17 3.0000 0.0000
5 ENSG00000242673 RN7SL167P RNA, 7SL, cytoplasmic 167, pseudogene 3.0000 0.0000
6 ENSG00000101003 GINS1 GINS complex subunit 1 2.8074 0.0000
7 ENSG00000105339 DENND3 DENN domain containing 3 2.8074 0.0000
8 ENSG00000264089 MIR3681 microRNA 3681 2.8074 0.0000
9 ENSG00000070367 EXOC5 exocyst complex component 5 2.5850 0.0000
10 ENSG00000072849 DERL2 derlin 2 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000216265 FABP12P1 fatty acid binding protein 12 pseudogene 1 -2.0000 0.5990
63127 ENSG00000214760 RPL21P1 ribosomal protein L21 pseudogene 1 -2.0000 0.1499
63126 ENSG00000214659 KRT8P26 keratin 8 pseudogene 26 -2.0000 1.0000
63125 ENSG00000212993 POU5F1B POU class 5 homeobox 1B -2.0000 1.0000
63124 ENSG00000212659 KRTAP9-6 keratin associated protein 9-6 -2.0000 1.0000
63123 ENSG00000211820 TRAV41 T cell receptor alpha variable 41 -2.0000 0.3711
63122 ENSG00000211819 TRAV40 T cell receptor alpha variable 40 -2.0000 0.3711
63121 ENSG00000211713 TRBV6-4 T cell receptor beta variable 6-4 -2.0000 1.0000
63120 ENSG00000211633 IGKV1D-42 immunoglobulin kappa variable 1D-42 (non-functional) -2.0000 1.0000
63119 ENSG00000207638 MIR99A microRNA 99a -2.0000 0.2342

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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