SHOGoiN Cell Methylome: GSM2481605
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481605 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP074598 | SRP074598_M78 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | ICM | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000214759 | ribosomal protein L36a (RPL36A) pseudogene | 3.3219 | 0.0000 | |
| 2 | ENSG00000202268 | NA | 3.1699 | 0.0000 | |
| 3 | ENSG00000144488 | ESPNL | espin like | 3.0384 | 0.0000 |
| 4 | ENSG00000115827 | DCAF17 | DDB1 and CUL4 associated factor 17 | 3.0000 | 0.0000 |
| 5 | ENSG00000242673 | RN7SL167P | RNA, 7SL, cytoplasmic 167, pseudogene | 3.0000 | 0.0000 |
| 6 | ENSG00000101003 | GINS1 | GINS complex subunit 1 | 2.8074 | 0.0000 |
| 7 | ENSG00000105339 | DENND3 | DENN domain containing 3 | 2.8074 | 0.0000 |
| 8 | ENSG00000264089 | MIR3681 | microRNA 3681 | 2.8074 | 0.0000 |
| 9 | ENSG00000070367 | EXOC5 | exocyst complex component 5 | 2.5850 | 0.0000 |
| 10 | ENSG00000072849 | DERL2 | derlin 2 | 2.5850 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000224609 | novel transcript | -2.0763 | 0.3796 | |
| 63340 | ENSG00000134240 | HMGCS2 | 3-hydroxy-3-methylglutaryl-CoA synthase 2 | -2.0763 | 0.3796 |
| 63339 | ENSG00000196917 | HCAR1 | hydroxycarboxylic acid receptor 1 | -2.0750 | 0.0000 |
| 63338 | ENSG00000263892 | MIR4667 | microRNA 4667 | -2.0748 | 0.1470 |
| 63337 | ENSG00000107140 | TESK1 | testis associated actin remodelling kinase 1 | -2.0748 | 0.1470 |
| 63336 | ENSG00000214198 | TTC41P | tetratricopeptide repeat domain 41, pseudogene | -2.0721 | 0.4925 |
| 63335 | ENSG00000259081 | novel transcript | -2.0713 | 0.0000 | |
| 63334 | ENSG00000278388 | guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1 (GNGT1) pseudogene | -2.0688 | 0.0260 | |
| 63333 | ENSG00000270321 | novel transcript | -2.0680 | 0.0971 | |
| 63332 | ENSG00000232350 | Ig lambda chain V-VI region pseudogene | -2.0680 | 0.0971 |
