Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481605

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2481605 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP074598	SRP074598_M78	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	ICM	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000214759		ribosomal protein L36a (RPL36A) pseudogene	3.3219	0.0000
2	ENSG00000202268		Small nucleolar RNA U3	3.1699	0.0000
3	ENSG00000144488	ESPNL	espin like	3.0384	0.0000
4	ENSG00000115827	DCAF17	DDB1 and CUL4 associated factor 17	3.0000	0.0000
5	ENSG00000242673	RN7SL167P	RNA, 7SL, cytoplasmic 167, pseudogene	3.0000	0.0000
6	ENSG00000101003	GINS1	GINS complex subunit 1	2.8074	0.0000
7	ENSG00000105339	DENND3	DENN domain containing 3	2.8074	0.0000
8	ENSG00000264089	MIR3681	microRNA 3681	2.8074	0.0000
9	ENSG00000070367	EXOC5	exocyst complex component 5	2.5850	0.0000
10	ENSG00000072849	DERL2	derlin 2	2.5850	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000216265	FABP12P1	fatty acid binding protein 12 pseudogene 1	-2.0000	0.5990
63127	ENSG00000214760	RPL21P1	ribosomal protein L21 pseudogene 1	-2.0000	0.1499
63126	ENSG00000214659	KRT8P26	keratin 8 pseudogene 26	-2.0000	1.0000
63125	ENSG00000212993	POU5F1B	POU class 5 homeobox 1B	-2.0000	1.0000
63124	ENSG00000212659	KRTAP9-6	keratin associated protein 9-6	-2.0000	1.0000
63123	ENSG00000211820	TRAV41	T cell receptor alpha variable 41	-2.0000	0.3711
63122	ENSG00000211819	TRAV40	T cell receptor alpha variable 40	-2.0000	0.3711
63121	ENSG00000211713	TRBV6-4	T cell receptor beta variable 6-4	-2.0000	1.0000
63120	ENSG00000211633	IGKV1D-42	immunoglobulin kappa variable 1D-42 (non-functional)	-2.0000	1.0000
63119	ENSG00000207638	MIR99A	microRNA 99a	-2.0000	0.2342

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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