SHOGoiN Cell Methylome: GSM2481605

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481605


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M78Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000214759 ribosomal protein L36a (RPL36A) pseudogene 3.3219 0.0000
2 ENSG00000202268 NA 3.1699 0.0000
3 ENSG00000144488 ESPNL espin like 3.0384 0.0000
4 ENSG00000115827 DCAF17 DDB1 and CUL4 associated factor 17 3.0000 0.0000
5 ENSG00000242673 RN7SL167P RNA, 7SL, cytoplasmic 167, pseudogene 3.0000 0.0000
6 ENSG00000101003 GINS1 GINS complex subunit 1 2.8074 0.0000
7 ENSG00000105339 DENND3 DENN domain containing 3 2.8074 0.0000
8 ENSG00000264089 MIR3681 microRNA 3681 2.8074 0.0000
9 ENSG00000070367 EXOC5 exocyst complex component 5 2.5850 0.0000
10 ENSG00000072849 DERL2 derlin 2 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000224609 novel transcript -2.0763 0.3796
63340 ENSG00000134240 HMGCS2 3-hydroxy-3-methylglutaryl-CoA synthase 2 -2.0763 0.3796
63339 ENSG00000196917 HCAR1 hydroxycarboxylic acid receptor 1 -2.0750 0.0000
63338 ENSG00000263892 MIR4667 microRNA 4667 -2.0748 0.1470
63337 ENSG00000107140 TESK1 testis associated actin remodelling kinase 1 -2.0748 0.1470
63336 ENSG00000214198 TTC41P tetratricopeptide repeat domain 41, pseudogene -2.0721 0.4925
63335 ENSG00000259081 novel transcript -2.0713 0.0000
63334 ENSG00000278388 guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1 (GNGT1) pseudogene -2.0688 0.0260
63333 ENSG00000270321 novel transcript -2.0680 0.0971
63332 ENSG00000232350 Ig lambda chain V-VI region pseudogene -2.0680 0.0971

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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