Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM2481605
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481605
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP074598
SRP074598_M78
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
ICM
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000214759
ribosomal protein L36a (RPL36A) pseudogene
3.3219
0.0000
2
ENSG00000202268
Small nucleolar RNA U3
3.1699
0.0000
3
ENSG00000144488
ESPNL
espin like
3.0384
0.0000
4
ENSG00000115827
DCAF17
DDB1 and CUL4 associated factor 17
3.0000
0.0000
5
ENSG00000242673
RN7SL167P
RNA, 7SL, cytoplasmic 167, pseudogene
3.0000
0.0000
6
ENSG00000101003
GINS1
GINS complex subunit 1
2.8074
0.0000
7
ENSG00000105339
DENND3
DENN domain containing 3
2.8074
0.0000
8
ENSG00000264089
MIR3681
microRNA 3681
2.8074
0.0000
9
ENSG00000070367
EXOC5
exocyst complex component 5
2.5850
0.0000
10
ENSG00000072849
DERL2
derlin 2
2.5850
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000216265
FABP12P1
fatty acid binding protein 12 pseudogene 1
-2.0000
0.5990
63127
ENSG00000214760
RPL21P1
ribosomal protein L21 pseudogene 1
-2.0000
0.1499
63126
ENSG00000214659
KRT8P26
keratin 8 pseudogene 26
-2.0000
1.0000
63125
ENSG00000212993
POU5F1B
POU class 5 homeobox 1B
-2.0000
1.0000
63124
ENSG00000212659
KRTAP9-6
keratin associated protein 9-6
-2.0000
1.0000
63123
ENSG00000211820
TRAV41
T cell receptor alpha variable 41
-2.0000
0.3711
63122
ENSG00000211819
TRAV40
T cell receptor alpha variable 40
-2.0000
0.3711
63121
ENSG00000211713
TRBV6-4
T cell receptor beta variable 6-4
-2.0000
1.0000
63120
ENSG00000211633
IGKV1D-42
immunoglobulin kappa variable 1D-42 (non-functional)
-2.0000
1.0000
63119
ENSG00000207638
MIR99A
microRNA 99a
-2.0000
0.2342
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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