SHOGoiN Cell Methylome: GSM2481606

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481606


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M79Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000221603 MIR1184-3 microRNA 1184-3 2.5850 0.0001
2 ENSG00000252982 RN7SKP234 RN7SK pseudogene 234 2.5850 0.0000
3 ENSG00000277150 F8A3 coagulation factor VIII associated 3 2.5850 0.0001
4 ENSG00000277745 H2AFB3 H2A histone family member B3 2.5850 0.0001
5 ENSG00000243593 LINC02049 long intergenic non-protein coding RNA 2049 2.5000 0.0000
6 ENSG00000111716 LDHB lactate dehydrogenase B 2.3219 0.0005
7 ENSG00000223078 RNU2-55P RNA, U2 small nuclear 55, pseudogene 2.3219 0.0005
8 ENSG00000224935 novel transcript 2.3219 0.0005
9 ENSG00000271368 immunoglobulin (CD79A) binding protein 1, pseudogene 2.3219 0.0005
10 ENSG00000254132 MTND6P3 MT-ND6 pseudogene 3 2.0226 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000164985 PSIP1 PC4 and SFRS1 interacting protein 1 -1.6271 0.0008
63340 ENSG00000156206 CFAP161 cilia and flagella associated protein 161 -1.6264 0.0000
63339 ENSG00000157214 STEAP2 STEAP2 metalloreductase -1.6261 0.0002
63338 ENSG00000104064 GABPB1 GA binding protein transcription factor subunit beta 1 -1.6253 0.0001
63337 ENSG00000235077 novel transcript -1.6253 0.0000
63336 ENSG00000111725 PRKAB1 protein kinase AMP-activated non-catalytic subunit beta 1 -1.6250 0.0000
63335 ENSG00000251256 LINC02358 long intergenic non-protein coding RNA 2358 -1.6250 0.0956
63334 ENSG00000249727 novel transcript -1.6250 0.0956
63333 ENSG00000228308 LINC01209 long intergenic non-protein coding RNA 1209 -1.6250 0.0956
63332 ENSG00000185899 TAS2R60 taste 2 receptor member 60 -1.6250 0.0956

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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