Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2481606
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481606
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP074598
SRP074598_M79
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
ICM
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000221603
MIR1184-3
microRNA 1184-3
2.5850
0.0001
2
ENSG00000252982
RN7SKP234
RN7SK pseudogene 234
2.5850
0.0000
3
ENSG00000277150
F8A3
coagulation factor VIII associated 3
2.5850
0.0001
4
ENSG00000277745
H2AB3
H2A.B variant histone 3
2.5850
0.0001
5
ENSG00000243593
LINC02049
long intergenic non-protein coding RNA 2049
2.5000
0.0000
6
ENSG00000111716
LDHB
lactate dehydrogenase B
2.3219
0.0005
7
ENSG00000223078
RNU2-55P
RNA, U2 small nuclear 55, pseudogene
2.3219
0.0005
8
ENSG00000224935
novel transcript
2.3219
0.0005
9
ENSG00000271368
immunoglobulin (CD79A) binding protein 1, pseudogene
2.3219
0.0005
10
ENSG00000254132
MTND6P3
MT-ND6 pseudogene 3
2.0226
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000264536
MIR5706
microRNA 5706
-1.5850
1.0000
63127
ENSG00000263885
MIR3920
microRNA 3920
-1.5850
1.0000
63126
ENSG00000263863
novel transcript
-1.5850
1.0000
63125
ENSG00000263600
MIR3915
microRNA 3915
-1.5850
1.0000
63124
ENSG00000262384
proteasome (prosome, macropain) 26S subunit, ATPase, 6 (PSMC6) pseudogene
-1.5850
1.0000
63123
ENSG00000261604
novel transcript, antisense to HMGCS1
-1.5850
1.0000
63122
ENSG00000261304
LINC02252
long intergenic non-protein coding RNA 2252
-1.5850
1.0000
63121
ENSG00000261229
novel transcript
-1.5850
1.0000
63120
ENSG00000261041
Golgin subfamily A member 2 pseudogene
-1.5850
1.0000
63119
ENSG00000261036
novel transcript
-1.5850
1.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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