Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481606

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481606


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M79Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000221603 MIR1184-3 microRNA 1184-3 2.5850 0.0001
2 ENSG00000252982 RN7SKP234 RN7SK pseudogene 234 2.5850 0.0000
3 ENSG00000277150 F8A3 coagulation factor VIII associated 3 2.5850 0.0001
4 ENSG00000277745 H2AB3 H2A.B variant histone 3 2.5850 0.0001
5 ENSG00000243593 LINC02049 long intergenic non-protein coding RNA 2049 2.5000 0.0000
6 ENSG00000111716 LDHB lactate dehydrogenase B 2.3219 0.0005
7 ENSG00000223078 RNU2-55P RNA, U2 small nuclear 55, pseudogene 2.3219 0.0005
8 ENSG00000224935 novel transcript 2.3219 0.0005
9 ENSG00000271368 immunoglobulin (CD79A) binding protein 1, pseudogene 2.3219 0.0005
10 ENSG00000254132 MTND6P3 MT-ND6 pseudogene 3 2.0226 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000264536 MIR5706 microRNA 5706 -1.5850 1.0000
63127 ENSG00000263885 MIR3920 microRNA 3920 -1.5850 1.0000
63126 ENSG00000263863 novel transcript -1.5850 1.0000
63125 ENSG00000263600 MIR3915 microRNA 3915 -1.5850 1.0000
63124 ENSG00000262384 proteasome (prosome, macropain) 26S subunit, ATPase, 6 (PSMC6) pseudogene -1.5850 1.0000
63123 ENSG00000261604 novel transcript, antisense to HMGCS1 -1.5850 1.0000
63122 ENSG00000261304 LINC02252 long intergenic non-protein coding RNA 2252 -1.5850 1.0000
63121 ENSG00000261229 novel transcript -1.5850 1.0000
63120 ENSG00000261041 Golgin subfamily A member 2 pseudogene -1.5850 1.0000
63119 ENSG00000261036 novel transcript -1.5850 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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