SHOGoiN Cell Methylome: GSM2481606
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481606 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP074598 | SRP074598_M79 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | ICM | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000221603 | MIR1184-3 | microRNA 1184-3 | 2.5850 | 0.0001 |
| 2 | ENSG00000252982 | RN7SKP234 | RN7SK pseudogene 234 | 2.5850 | 0.0000 |
| 3 | ENSG00000277150 | F8A3 | coagulation factor VIII associated 3 | 2.5850 | 0.0001 |
| 4 | ENSG00000277745 | H2AFB3 | H2A histone family member B3 | 2.5850 | 0.0001 |
| 5 | ENSG00000243593 | LINC02049 | long intergenic non-protein coding RNA 2049 | 2.5000 | 0.0000 |
| 6 | ENSG00000111716 | LDHB | lactate dehydrogenase B | 2.3219 | 0.0005 |
| 7 | ENSG00000223078 | RNU2-55P | RNA, U2 small nuclear 55, pseudogene | 2.3219 | 0.0005 |
| 8 | ENSG00000224935 | novel transcript | 2.3219 | 0.0005 | |
| 9 | ENSG00000271368 | immunoglobulin (CD79A) binding protein 1, pseudogene | 2.3219 | 0.0005 | |
| 10 | ENSG00000254132 | MTND6P3 | MT-ND6 pseudogene 3 | 2.0226 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000164985 | PSIP1 | PC4 and SFRS1 interacting protein 1 | -1.6271 | 0.0008 |
| 63340 | ENSG00000156206 | CFAP161 | cilia and flagella associated protein 161 | -1.6264 | 0.0000 |
| 63339 | ENSG00000157214 | STEAP2 | STEAP2 metalloreductase | -1.6261 | 0.0002 |
| 63338 | ENSG00000104064 | GABPB1 | GA binding protein transcription factor subunit beta 1 | -1.6253 | 0.0001 |
| 63337 | ENSG00000235077 | novel transcript | -1.6253 | 0.0000 | |
| 63336 | ENSG00000111725 | PRKAB1 | protein kinase AMP-activated non-catalytic subunit beta 1 | -1.6250 | 0.0000 |
| 63335 | ENSG00000251256 | LINC02358 | long intergenic non-protein coding RNA 2358 | -1.6250 | 0.0956 |
| 63334 | ENSG00000249727 | novel transcript | -1.6250 | 0.0956 | |
| 63333 | ENSG00000228308 | LINC01209 | long intergenic non-protein coding RNA 1209 | -1.6250 | 0.0956 |
| 63332 | ENSG00000185899 | TAS2R60 | taste 2 receptor member 60 | -1.6250 | 0.0956 |
