SHOGoiN Cell Methylome: GSM2481607

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481607


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M80Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000065923 SLC9A7 solute carrier family 9 member A7 2.3219 0.0000
2 ENSG00000186803 IFNA10 interferon alpha 10 2.3219 0.0000
3 ENSG00000224065 SRIP2 sorcin pseudogene 2 2.3219 0.0000
4 ENSG00000234105 novel transcript 2.3219 0.0004
5 ENSG00000257070 cytochrome c oxidase subunit VIIa polypeptide 2 like (COX7A2L) pseudogene 2.1610 0.0000
6 ENSG00000197309 OR10D3 olfactory receptor family 10 subfamily D member 3 (putative) 2.0000 0.0000
7 ENSG00000218643 RPL5P20 ribosomal protein L5 pseudogene 20 2.0000 0.0029
8 ENSG00000222924 RNU6-1148P RNA, U6 small nuclear 1148, pseudogene 2.0000 0.0000
9 ENSG00000229565 LINC02264 long intergenic non-protein coding RNA 2264 2.0000 0.0029
10 ENSG00000230169 RPL30P16 ribosomal protein L30 pseudogene 16 2.0000 0.0029

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000245556 SCAMP1-AS1 SCAMP1 antisense RNA 1 -1.6599 0.0000
63340 ENSG00000248266 novel transcript -1.6595 0.0000
63339 ENSG00000129167 TPH1 tryptophan hydroxylase 1 -1.6594 0.0000
63338 ENSG00000198860 TSEN15 tRNA splicing endonuclease subunit 15 -1.6592 0.0001
63337 ENSG00000223573 TINCR TINCR ubiquitin domain containing -1.6582 0.0000
63336 ENSG00000247372 novel transcript -1.6579 0.0000
63335 ENSG00000250425 OR7E35P olfactory receptor family 7 subfamily E member 35 pseudogene -1.6571 0.0046
63334 ENSG00000224940 PRRT4 proline rich transmembrane protein 4 -1.6570 0.0000
63333 ENSG00000253766 novel transcript -1.6569 0.0363
63332 ENSG00000270757 HSPE1-MOB4 HSPE1-MOB4 readthrough -1.6565 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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