SHOGoiN Cell Methylome: GSM2481608

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481608


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M81Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000205496 OR51A2 olfactory receptor family 51 subfamily A member 2 2.0000 0.0068
2 ENSG00000248195 novel transcript 2.0000 0.0068
3 ENSG00000255187 novel transcript 2.0000 0.0068
4 ENSG00000261689 AGGF1P4 angiogenic factor with G-patch and FHA domains 1 pseudogene 4 2.0000 0.0068
5 ENSG00000252652 NA 1.8000 0.0000
6 ENSG00000229928 LINC00400 long intergenic non-protein coding RNA 400 1.7500 0.0000
7 ENSG00000213194 CDK7P1 cyclin dependent kinase 7 pseudogene 1 1.6667 0.0000
8 ENSG00000134551 PRH2 proline rich protein HaeIII subfamily 2 1.5850 0.0360
9 ENSG00000183346 CABCOCO1 ciliary associated calcium binding coiled-coil 1 1.5850 0.0360
10 ENSG00000199051 MIR361 microRNA 361 1.5850 0.0360

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000125817 CENPB centromere protein B -1.3808 0.0000
63340 ENSG00000146834 MEPCE methylphosphate capping enzyme -1.3805 0.0011
63339 ENSG00000030419 IKZF2 IKAROS family zinc finger 2 -1.3792 0.0001
63338 ENSG00000278677 HIST1H2AM histone cluster 1 H2A family member m -1.3786 0.0088
63337 ENSG00000163328 GPR155 G protein-coupled receptor 155 -1.3783 0.0060
63336 ENSG00000234625 LINC00380 long intergenic non-protein coding RNA 380 -1.3776 0.1054
63335 ENSG00000188725 SMIM15 small integral membrane protein 15 -1.3774 0.0003
63334 ENSG00000213669 ribosomal protein L21 (RPL21) pseudogene -1.3773 0.0000
63333 ENSG00000248980 novel transcript -1.3759 0.0000
63332 ENSG00000222072 NA -1.3750 0.0059

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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