Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481608

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481608


Profile download
7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M81Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000205496 OR51A2 olfactory receptor family 51 subfamily A member 2 2.0000 0.0068
2 ENSG00000248195 novel transcript 2.0000 0.0068
3 ENSG00000255187 LINC02748 long intergenic non-protein coding RNA 2748 2.0000 0.0068
4 ENSG00000261689 AGGF1P4 angiogenic factor with G-patch and FHA domains 1 pseudogene 4 2.0000 0.0068
5 ENSG00000252652 Y RNA 1.8000 0.0000
6 ENSG00000229928 LINC00400 long intergenic non-protein coding RNA 400 1.7500 0.0000
7 ENSG00000213194 CDK7P1 cyclin dependent kinase 7 pseudogene 1 1.6667 0.0000
8 ENSG00000134551 PRH2 proline rich protein HaeIII subfamily 2 1.5850 0.0360
9 ENSG00000183346 CABCOCO1 ciliary associated calcium binding coiled-coil 1 1.5850 0.0360
10 ENSG00000199051 MIR361 microRNA 361 1.5850 0.0360

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000164185 ZNF474 zinc finger protein 474 -1.3333 0.5911
63172 ENSG00000229422 novel transcript -1.3326 0.0000
63171 ENSG00000284265 MIR4683 microRNA 4683 -1.3315 0.0000
63170 ENSG00000273998 novel transcript -1.3315 0.0000
63169 ENSG00000242692 RPS27AP1 RPS27A pseudogene 1 -1.3297 0.0323
63168 ENSG00000253806 novel transcript -1.3292 0.0000
63167 ENSG00000272341 novel transcript -1.3290 0.0000
63166 ENSG00000255181 CCDC166 coiled-coil domain containing 166 -1.3285 0.0000
63165 ENSG00000255535 similar to ribosomal protein L10 (RPL10) pseudogene -1.3281 0.0000
63164 ENSG00000250120 PCDHA10 protocadherin alpha 10 -1.3281 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...