Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481608

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2481608 Profile download	7020007000000000000000-780	Sequence Read Archive	SRP074598	SRP074598_M81	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	TE	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000205496	OR51A2	olfactory receptor family 51 subfamily A member 2	2.0000	0.0068
2	ENSG00000248195		novel transcript	2.0000	0.0068
3	ENSG00000255187	LINC02748	long intergenic non-protein coding RNA 2748	2.0000	0.0068
4	ENSG00000261689	AGGF1P4	angiogenic factor with G-patch and FHA domains 1 pseudogene 4	2.0000	0.0068
5	ENSG00000252652		Y RNA	1.8000	0.0000
6	ENSG00000229928	LINC00400	long intergenic non-protein coding RNA 400	1.7500	0.0000
7	ENSG00000213194	CDK7P1	cyclin dependent kinase 7 pseudogene 1	1.6667	0.0000
8	ENSG00000134551	PRH2	proline rich protein HaeIII subfamily 2	1.5850	0.0360
9	ENSG00000183346	CABCOCO1	ciliary associated calcium binding coiled-coil 1	1.5850	0.0360
10	ENSG00000199051	MIR361	microRNA 361	1.5850	0.0360

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63173	ENSG00000164185	ZNF474	zinc finger protein 474	-1.3333	0.5911
63172	ENSG00000229422		novel transcript	-1.3326	0.0000
63171	ENSG00000284265	MIR4683	microRNA 4683	-1.3315	0.0000
63170	ENSG00000273998		novel transcript	-1.3315	0.0000
63169	ENSG00000242692	RPS27AP1	RPS27A pseudogene 1	-1.3297	0.0323
63168	ENSG00000253806		novel transcript	-1.3292	0.0000
63167	ENSG00000272341		novel transcript	-1.3290	0.0000
63166	ENSG00000255181	CCDC166	coiled-coil domain containing 166	-1.3285	0.0000
63165	ENSG00000255535		similar to ribosomal protein L10 (RPL10) pseudogene	-1.3281	0.0000
63164	ENSG00000250120	PCDHA10	protocadherin alpha 10	-1.3281	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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