Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481608

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481608


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M81Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000205496 OR51A2 olfactory receptor family 51 subfamily A member 2 2.0000 0.0068
2 ENSG00000248195 novel transcript 2.0000 0.0068
3 ENSG00000255187 LINC02748 long intergenic non-protein coding RNA 2748 2.0000 0.0068
4 ENSG00000261689 AGGF1P4 angiogenic factor with G-patch and FHA domains 1 pseudogene 4 2.0000 0.0068
5 ENSG00000252652 NA 1.8000 0.0000
6 ENSG00000229928 LINC00400 long intergenic non-protein coding RNA 400 1.7500 0.0000
7 ENSG00000213194 CDK7P1 cyclin dependent kinase 7 pseudogene 1 1.6667 0.0000
8 ENSG00000134551 PRH2 proline rich protein HaeIII subfamily 2 1.5850 0.0360
9 ENSG00000183346 CABCOCO1 ciliary associated calcium binding coiled-coil 1 1.5850 0.0360
10 ENSG00000199051 MIR361 microRNA 361 1.5850 0.0360

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63221 ENSG00000258446 COX assembly mitochondrial protein homolog (S. cerevisiae) (CMC1) pseudogene -1.3429 0.0000
63220 ENSG00000257122 RRN3P3 RRN3 pseudogene 3 -1.3429 0.0000
63219 ENSG00000281769 LINC01230 long intergenic non-protein coding RNA 1230 -1.3412 0.0000
63218 ENSG00000272046 novel transcript -1.3412 0.0355
63217 ENSG00000248790 novel transcript -1.3412 0.0355
63216 ENSG00000242668 RN7SL317P RNA, 7SL, cytoplasmic 317, pseudogene -1.3412 0.0355
63215 ENSG00000214563 GAPDHP15 glyceraldehyde-3-phosphate dehydrogenase pseudogene 15 -1.3412 0.0355
63214 ENSG00000154342 WNT3A Wnt family member 3A -1.3411 0.0000
63213 ENSG00000202474 RNA5SP283 RNA, 5S ribosomal pseudogene 283 -1.3409 0.0000
63212 ENSG00000256747 novel transcript -1.3404 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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