Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2481608
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481608
Profile download
7020007000000000000000-780
Sequence Read Archive
SRP074598
SRP074598_M81
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
TE
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000205496
OR51A2
olfactory receptor family 51 subfamily A member 2
2.0000
0.0068
2
ENSG00000248195
novel transcript
2.0000
0.0068
3
ENSG00000255187
LINC02748
long intergenic non-protein coding RNA 2748
2.0000
0.0068
4
ENSG00000261689
AGGF1P4
angiogenic factor with G-patch and FHA domains 1 pseudogene 4
2.0000
0.0068
5
ENSG00000252652
Y RNA
1.8000
0.0000
6
ENSG00000229928
LINC00400
long intergenic non-protein coding RNA 400
1.7500
0.0000
7
ENSG00000213194
CDK7P1
cyclin dependent kinase 7 pseudogene 1
1.6667
0.0000
8
ENSG00000134551
PRH2
proline rich protein HaeIII subfamily 2
1.5850
0.0360
9
ENSG00000183346
CABCOCO1
ciliary associated calcium binding coiled-coil 1
1.5850
0.0360
10
ENSG00000199051
MIR361
microRNA 361
1.5850
0.0360
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63173
ENSG00000164185
ZNF474
zinc finger protein 474
-1.3333
0.5911
63172
ENSG00000229422
novel transcript
-1.3326
0.0000
63171
ENSG00000284265
MIR4683
microRNA 4683
-1.3315
0.0000
63170
ENSG00000273998
novel transcript
-1.3315
0.0000
63169
ENSG00000242692
RPS27AP1
RPS27A pseudogene 1
-1.3297
0.0323
63168
ENSG00000253806
novel transcript
-1.3292
0.0000
63167
ENSG00000272341
novel transcript
-1.3290
0.0000
63166
ENSG00000255181
CCDC166
coiled-coil domain containing 166
-1.3285
0.0000
63165
ENSG00000255535
similar to ribosomal protein L10 (RPL10) pseudogene
-1.3281
0.0000
63164
ENSG00000250120
PCDHA10
protocadherin alpha 10
-1.3281
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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