Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481608

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2481608 Profile download	7020007000000000000000-780	Sequence Read Archive	SRP074598	SRP074598_M81	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	TE	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000205496	OR51A2	olfactory receptor family 51 subfamily A member 2	2.0000	0.0068
2	ENSG00000248195		novel transcript	2.0000	0.0068
3	ENSG00000255187	LINC02748	long intergenic non-protein coding RNA 2748	2.0000	0.0068
4	ENSG00000261689	AGGF1P4	angiogenic factor with G-patch and FHA domains 1 pseudogene 4	2.0000	0.0068
5	ENSG00000252652		NA	1.8000	0.0000
6	ENSG00000229928	LINC00400	long intergenic non-protein coding RNA 400	1.7500	0.0000
7	ENSG00000213194	CDK7P1	cyclin dependent kinase 7 pseudogene 1	1.6667	0.0000
8	ENSG00000134551	PRH2	proline rich protein HaeIII subfamily 2	1.5850	0.0360
9	ENSG00000183346	CABCOCO1	ciliary associated calcium binding coiled-coil 1	1.5850	0.0360
10	ENSG00000199051	MIR361	microRNA 361	1.5850	0.0360

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63221	ENSG00000258446		COX assembly mitochondrial protein homolog (S. cerevisiae) (CMC1) pseudogene	-1.3429	0.0000
63220	ENSG00000257122	RRN3P3	RRN3 pseudogene 3	-1.3429	0.0000
63219	ENSG00000281769	LINC01230	long intergenic non-protein coding RNA 1230	-1.3412	0.0000
63218	ENSG00000272046		novel transcript	-1.3412	0.0355
63217	ENSG00000248790		novel transcript	-1.3412	0.0355
63216	ENSG00000242668	RN7SL317P	RNA, 7SL, cytoplasmic 317, pseudogene	-1.3412	0.0355
63215	ENSG00000214563	GAPDHP15	glyceraldehyde-3-phosphate dehydrogenase pseudogene 15	-1.3412	0.0355
63214	ENSG00000154342	WNT3A	Wnt family member 3A	-1.3411	0.0000
63213	ENSG00000202474	RNA5SP283	RNA, 5S ribosomal pseudogene 283	-1.3409	0.0000
63212	ENSG00000256747		novel transcript	-1.3404	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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