SHOGoiN Cell Methylome: GSM2481608
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481608 Profile download | 7020007000000000000000-780 | Sequence Read Archive | SRP074598 | SRP074598_M81 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | TE | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000205496 | OR51A2 | olfactory receptor family 51 subfamily A member 2 | 2.0000 | 0.0068 |
| 2 | ENSG00000248195 | novel transcript | 2.0000 | 0.0068 | |
| 3 | ENSG00000255187 | novel transcript | 2.0000 | 0.0068 | |
| 4 | ENSG00000261689 | AGGF1P4 | angiogenic factor with G-patch and FHA domains 1 pseudogene 4 | 2.0000 | 0.0068 |
| 5 | ENSG00000252652 | NA | 1.8000 | 0.0000 | |
| 6 | ENSG00000229928 | LINC00400 | long intergenic non-protein coding RNA 400 | 1.7500 | 0.0000 |
| 7 | ENSG00000213194 | CDK7P1 | cyclin dependent kinase 7 pseudogene 1 | 1.6667 | 0.0000 |
| 8 | ENSG00000134551 | PRH2 | proline rich protein HaeIII subfamily 2 | 1.5850 | 0.0360 |
| 9 | ENSG00000183346 | CABCOCO1 | ciliary associated calcium binding coiled-coil 1 | 1.5850 | 0.0360 |
| 10 | ENSG00000199051 | MIR361 | microRNA 361 | 1.5850 | 0.0360 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000125817 | CENPB | centromere protein B | -1.3808 | 0.0000 |
| 63340 | ENSG00000146834 | MEPCE | methylphosphate capping enzyme | -1.3805 | 0.0011 |
| 63339 | ENSG00000030419 | IKZF2 | IKAROS family zinc finger 2 | -1.3792 | 0.0001 |
| 63338 | ENSG00000278677 | HIST1H2AM | histone cluster 1 H2A family member m | -1.3786 | 0.0088 |
| 63337 | ENSG00000163328 | GPR155 | G protein-coupled receptor 155 | -1.3783 | 0.0060 |
| 63336 | ENSG00000234625 | LINC00380 | long intergenic non-protein coding RNA 380 | -1.3776 | 0.1054 |
| 63335 | ENSG00000188725 | SMIM15 | small integral membrane protein 15 | -1.3774 | 0.0003 |
| 63334 | ENSG00000213669 | ribosomal protein L21 (RPL21) pseudogene | -1.3773 | 0.0000 | |
| 63333 | ENSG00000248980 | novel transcript | -1.3759 | 0.0000 | |
| 63332 | ENSG00000222072 | NA | -1.3750 | 0.0059 |
