Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481609

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481609


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M82Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000243051 RN7SL269P RNA, 7SL, cytoplasmic 269, pseudogene 2.3219 0.0005
2 ENSG00000256512 novel transcript 2.3219 0.0000
3 ENSG00000242256 RN7SL57P RNA, 7SL, cytoplasmic 57, pseudogene 2.1699 0.0000
4 ENSG00000201826 RNU6-867P RNA, U6 small nuclear 867, pseudogene 2.0000 0.0033
5 ENSG00000202471 RNU4-20P RNA, U4 small nuclear 20, pseudogene 2.0000 0.0000
6 ENSG00000207963 MIR569 microRNA 569 2.0000 0.0033
7 ENSG00000214124 SNRPEP9 SNRPE pseudogene 9 2.0000 0.0033
8 ENSG00000244329 UBA52P9 ubiquitin A-52 residue ribosomal protein fusion product 1 pseudogene 9 2.0000 0.0033
9 ENSG00000244357 RN7SL145P RNA, 7SL, cytoplasmic 145, pseudogene 2.0000 0.0000
10 ENSG00000248824 UDP glucuronosyltransferase 2 family pseudogene 2.0000 0.0033

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000201607 RNU4-16P RNA, U4 small nuclear 16, pseudogene -1.5850 0.6145
63127 ENSG00000201364 RN7SKP37 RN7SK pseudogene 37 -1.5850 1.0000
63126 ENSG00000201084 Y RNA -1.5850 1.0000
63125 ENSG00000200986 RNU6-819P RNA, U6 small nuclear 819, pseudogene -1.5850 1.0000
63124 ENSG00000200742 Y RNA -1.5850 0.4516
63123 ENSG00000200248 RNA5SP214 RNA, 5S ribosomal pseudogene 214 -1.5850 1.0000
63122 ENSG00000199986 RNU6-486P RNA, U6 small nuclear 486, pseudogene -1.5850 1.0000
63121 ENSG00000199959 NA -1.5850 1.0000
63120 ENSG00000199523 RNA5SP226 RNA, 5S ribosomal pseudogene 226 -1.5850 0.2347
63119 ENSG00000199395 RNA5SP93 RNA, 5S ribosomal pseudogene 93 -1.5850 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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