SHOGoiN Cell Methylome: GSM2481610
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481610 Profile download | 7020007000000000000000-780 | Sequence Read Archive | SRP074598 | SRP074598_M83 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | TE | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000200238 | RNA5SP133 | RNA, 5S ribosomal pseudogene 133 | 3.0000 | 0.0000 |
| 2 | ENSG00000208024 | MIR199A2 | microRNA 199a-2 | 2.8074 | 0.0000 |
| 3 | ENSG00000230630 | DNM3OS | DNM3 opposite strand/antisense RNA | 2.8074 | 0.0000 |
| 4 | ENSG00000276605 | complement component 7 (C7) pseudogene | 2.5850 | 0.0001 | |
| 5 | ENSG00000243593 | LINC02049 | long intergenic non-protein coding RNA 2049 | 2.5837 | 0.0000 |
| 6 | ENSG00000227848 | SUCLA2-AS1 | SUCLA2 antisense RNA 1 | 2.4875 | 0.0000 |
| 7 | ENSG00000214035 | karyopherin alpha 2 (RAG cohort 1, importin alpha 1) (KPNA2) pseudogene | 2.3219 | 0.0006 | |
| 8 | ENSG00000220506 | novel pseudogene | 2.3219 | 0.0000 | |
| 9 | ENSG00000229384 | HMGB1P16 | high mobility group box 1 pseudogene 16 | 2.3219 | 0.0006 |
| 10 | ENSG00000230312 | solute carrier family 25 (mitochondrial oxodicarboxylate carrier), member 21 (SLC25A21) pseudogene | 2.3219 | 0.0006 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000282804 | novel protein | -1.7925 | 1.0000 | |
| 63340 | ENSG00000280339 | novel transcript | -1.7925 | 1.0000 | |
| 63339 | ENSG00000276407 | novel transcript | -1.7925 | 0.5986 | |
| 63337 | ENSG00000258895 | poly(A) binding protein, cytoplasmic 1 (PABPC1) pseudogene | -1.7925 | 1.0000 | |
| 63336 | ENSG00000254313 | non-metastatic cells 2, protein (NM23B) expressed in pseudogene | -1.7925 | 1.0000 | |
| 63335 | ENSG00000250567 | novel transcript | -1.7925 | 0.3807 | |
| 63334 | ENSG00000232031 | novel transcript | -1.7925 | 1.0000 | |
| 63333 | ENSG00000229788 | LINC00388 | long intergenic non-protein coding RNA 388 | -1.7925 | 1.0000 |
| 63332 | ENSG00000212134 | NA | -1.7925 | 0.5986 | |
| 10 | ENSG00000230312 | solute carrier family 25 (mitochondrial oxodicarboxylate carrier), member 21 (SLC25A21) pseudogene | 2.3219 | 0.0006 |
