Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM2481610
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481610
Profile download
7020007000000000000000-780
Sequence Read Archive
SRP074598
SRP074598_M83
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
TE
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000200238
RNA5SP133
RNA, 5S ribosomal pseudogene 133
3.0000
0.0000
2
ENSG00000208024
MIR199A2
microRNA 199a-2
2.8074
0.0000
3
ENSG00000230630
DNM3OS
DNM3 opposite strand/antisense RNA
2.8074
0.0000
4
ENSG00000276605
complement component 7 (C7) pseudogene
2.5850
0.0001
5
ENSG00000243593
LINC02049
long intergenic non-protein coding RNA 2049
2.5837
0.0000
6
ENSG00000227848
SUCLA2-AS1
SUCLA2 antisense RNA 1
2.4875
0.0000
7
ENSG00000214035
karyopherin alpha 2 (RAG cohort 1, importin alpha 1) (KPNA2) pseudogene
2.3219
0.0006
8
ENSG00000220506
novel pseudogene
2.3219
0.0000
9
ENSG00000229384
HMGB1P16
high mobility group box 1 pseudogene 16
2.3219
0.0006
10
ENSG00000230312
SLC25A53P1
SLC25A53 pseudogene 1
2.3219
0.0006
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63173
ENSG00000261130
MPV17 mitochondrial inner membrane protein like
-1.7165
0.0000
63172
ENSG00000095596
CYP26A1
cytochrome P450 family 26 subfamily A member 1
-1.7158
0.0000
63171
ENSG00000206941
SNORD15A
small nucleolar RNA, C/D box 15A
-1.7156
0.0000
63170
ENSG00000149273
RPS3
ribosomal protein S3
-1.7156
0.0000
63169
ENSG00000181744
DIPK2A
divergent protein kinase domain 2A
-1.7154
0.0000
63168
ENSG00000248898
novel transcript
-1.7151
0.0061
63167
ENSG00000186967
KRTAP19-4
keratin associated protein 19-4
-1.7150
0.0008
63166
ENSG00000177875
CCDC184
coiled-coil domain containing 184
-1.7147
0.0157
63165
ENSG00000254486
LINC02547
long intergenic non-protein coding RNA 2547
-1.7143
0.0938
63164
ENSG00000214077
GNAQP1
G protein subunit alpha q pseudogene 1
-1.7143
0.1413
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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