SHOGoiN Cell Methylome: GSM2481610

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481610


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M83Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000200238 RNA5SP133 RNA, 5S ribosomal pseudogene 133 3.0000 0.0000
2 ENSG00000208024 MIR199A2 microRNA 199a-2 2.8074 0.0000
3 ENSG00000230630 DNM3OS DNM3 opposite strand/antisense RNA 2.8074 0.0000
4 ENSG00000276605 complement component 7 (C7) pseudogene 2.5850 0.0001
5 ENSG00000243593 LINC02049 long intergenic non-protein coding RNA 2049 2.5837 0.0000
6 ENSG00000227848 SUCLA2-AS1 SUCLA2 antisense RNA 1 2.4875 0.0000
7 ENSG00000214035 karyopherin alpha 2 (RAG cohort 1, importin alpha 1) (KPNA2) pseudogene 2.3219 0.0006
8 ENSG00000220506 novel pseudogene 2.3219 0.0000
9 ENSG00000229384 HMGB1P16 high mobility group box 1 pseudogene 16 2.3219 0.0006
10 ENSG00000230312 solute carrier family 25 (mitochondrial oxodicarboxylate carrier), member 21 (SLC25A21) pseudogene 2.3219 0.0006

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000282804 novel protein -1.7925 1.0000
63340 ENSG00000280339 novel transcript -1.7925 1.0000
63339 ENSG00000276407 novel transcript -1.7925 0.5986
63337 ENSG00000258895 poly(A) binding protein, cytoplasmic 1 (PABPC1) pseudogene -1.7925 1.0000
63336 ENSG00000254313 non-metastatic cells 2, protein (NM23B) expressed in pseudogene -1.7925 1.0000
63335 ENSG00000250567 novel transcript -1.7925 0.3807
63334 ENSG00000232031 novel transcript -1.7925 1.0000
63333 ENSG00000229788 LINC00388 long intergenic non-protein coding RNA 388 -1.7925 1.0000
63332 ENSG00000212134 NA -1.7925 0.5986
10 ENSG00000230312 solute carrier family 25 (mitochondrial oxodicarboxylate carrier), member 21 (SLC25A21) pseudogene 2.3219 0.0006

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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