Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481610

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2481610 Profile download	7020007000000000000000-780	Sequence Read Archive	SRP074598	SRP074598_M83	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	TE	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000200238	RNA5SP133	RNA, 5S ribosomal pseudogene 133	3.0000	0.0000
2	ENSG00000208024	MIR199A2	microRNA 199a-2	2.8074	0.0000
3	ENSG00000230630	DNM3OS	DNM3 opposite strand/antisense RNA	2.8074	0.0000
4	ENSG00000276605		complement component 7 (C7) pseudogene	2.5850	0.0001
5	ENSG00000243593	LINC02049	long intergenic non-protein coding RNA 2049	2.5837	0.0000
6	ENSG00000227848	SUCLA2-AS1	SUCLA2 antisense RNA 1	2.4875	0.0000
7	ENSG00000214035		karyopherin alpha 2 (RAG cohort 1, importin alpha 1) (KPNA2) pseudogene	2.3219	0.0006
8	ENSG00000220506		novel pseudogene	2.3219	0.0000
9	ENSG00000229384	HMGB1P16	high mobility group box 1 pseudogene 16	2.3219	0.0006
10	ENSG00000230312	SLC25A53P1	SLC25A53 pseudogene 1	2.3219	0.0006

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63173	ENSG00000261130		MPV17 mitochondrial inner membrane protein like	-1.7165	0.0000
63172	ENSG00000095596	CYP26A1	cytochrome P450 family 26 subfamily A member 1	-1.7158	0.0000
63171	ENSG00000206941	SNORD15A	small nucleolar RNA, C/D box 15A	-1.7156	0.0000
63170	ENSG00000149273	RPS3	ribosomal protein S3	-1.7156	0.0000
63169	ENSG00000181744	DIPK2A	divergent protein kinase domain 2A	-1.7154	0.0000
63168	ENSG00000248898		novel transcript	-1.7151	0.0061
63167	ENSG00000186967	KRTAP19-4	keratin associated protein 19-4	-1.7150	0.0008
63166	ENSG00000177875	CCDC184	coiled-coil domain containing 184	-1.7147	0.0157
63165	ENSG00000254486	LINC02547	long intergenic non-protein coding RNA 2547	-1.7143	0.0938
63164	ENSG00000214077	GNAQP1	G protein subunit alpha q pseudogene 1	-1.7143	0.1413

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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