Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481610

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481610


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M83Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000200238 RNA5SP133 RNA, 5S ribosomal pseudogene 133 3.0000 0.0000
2 ENSG00000208024 MIR199A2 microRNA 199a-2 2.8074 0.0000
3 ENSG00000230630 DNM3OS DNM3 opposite strand/antisense RNA 2.8074 0.0000
4 ENSG00000276605 complement component 7 (C7) pseudogene 2.5850 0.0001
5 ENSG00000243593 LINC02049 long intergenic non-protein coding RNA 2049 2.5837 0.0000
6 ENSG00000227848 SUCLA2-AS1 SUCLA2 antisense RNA 1 2.4875 0.0000
7 ENSG00000214035 karyopherin alpha 2 (RAG cohort 1, importin alpha 1) (KPNA2) pseudogene 2.3219 0.0006
8 ENSG00000220506 novel pseudogene 2.3219 0.0000
9 ENSG00000229384 HMGB1P16 high mobility group box 1 pseudogene 16 2.3219 0.0006
10 ENSG00000230312 SLC25A53P1 SLC25A53 pseudogene 1 2.3219 0.0006

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000261130 MPV17 mitochondrial inner membrane protein like -1.7165 0.0000
63172 ENSG00000095596 CYP26A1 cytochrome P450 family 26 subfamily A member 1 -1.7158 0.0000
63171 ENSG00000206941 SNORD15A small nucleolar RNA, C/D box 15A -1.7156 0.0000
63170 ENSG00000149273 RPS3 ribosomal protein S3 -1.7156 0.0000
63169 ENSG00000181744 DIPK2A divergent protein kinase domain 2A -1.7154 0.0000
63168 ENSG00000248898 novel transcript -1.7151 0.0061
63167 ENSG00000186967 KRTAP19-4 keratin associated protein 19-4 -1.7150 0.0008
63166 ENSG00000177875 CCDC184 coiled-coil domain containing 184 -1.7147 0.0157
63165 ENSG00000254486 LINC02547 long intergenic non-protein coding RNA 2547 -1.7143 0.0938
63164 ENSG00000214077 GNAQP1 G protein subunit alpha q pseudogene 1 -1.7143 0.1413

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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