Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481610

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2481610 Profile download	7020007000000000000000-780	Sequence Read Archive	SRP074598	SRP074598_M83	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	TE	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000200238	RNA5SP133	RNA, 5S ribosomal pseudogene 133	3.0000	0.0000
2	ENSG00000208024	MIR199A2	microRNA 199a-2	2.8074	0.0000
3	ENSG00000230630	DNM3OS	DNM3 opposite strand/antisense RNA	2.8074	0.0000
4	ENSG00000276605		complement component 7 (C7) pseudogene	2.5850	0.0001
5	ENSG00000243593	LINC02049	long intergenic non-protein coding RNA 2049	2.5837	0.0000
6	ENSG00000227848	SUCLA2-AS1	SUCLA2 antisense RNA 1	2.4875	0.0000
7	ENSG00000214035		karyopherin alpha 2 (RAG cohort 1, importin alpha 1) (KPNA2) pseudogene	2.3219	0.0006
8	ENSG00000220506		novel pseudogene	2.3219	0.0000
9	ENSG00000229384	HMGB1P16	high mobility group box 1 pseudogene 16	2.3219	0.0006
10	ENSG00000230312		solute carrier family 25 (mitochondrial oxodicarboxylate carrier), member 21 (SLC25A21) pseudogene	2.3219	0.0006

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63221	ENSG00000187808	SOWAHD	sosondowah ankyrin repeat domain family member D	-1.7368	0.0398
63220	ENSG00000260342		novel protein	-1.7361	0.0009
63219	ENSG00000228110	ST13P19	ST13, Hsp70 interacting protein pseudogene 19	-1.7350	0.0248
63218	ENSG00000113643	RARS1	arginyl-tRNA synthetase 1	-1.7348	0.0706
63217	ENSG00000164197	RNF180	ring finger protein 180	-1.7340	0.0000
63216	ENSG00000231203	KRT8P10	keratin 8 pseudogene 10	-1.7334	0.0017
63215	ENSG00000273456		novel transcript	-1.7332	0.0000
63214	ENSG00000174521	TTC9B	tetratricopeptide repeat domain 9B	-1.7331	0.0000
63213	ENSG00000232717	TRIM51JP	tripartite motif-containing 51J, pseudogene	-1.7331	0.1506
63212	ENSG00000108797	CNTNAP1	contactin associated protein 1	-1.7327	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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