SHOGoiN Cell Methylome: GSM2481611

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481611


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M84Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000273894 SLC20A1P2 solute carrier family 20 member 1 pseudogene 2 2.4973 0.0000
2 ENSG00000165076 PRSS37 serine protease 37 2.3219 0.0005
3 ENSG00000236818 ARL5AP2 ADP ribosylation factor like GTPase 5A pseudogene 2 2.3219 0.0005
4 ENSG00000254939 zinc finger protein 614 (ZNF614) pseudogene 2.3219 0.0005
5 ENSG00000274149 protein kinase, X-linked (PRKX) pseudogene 2.3219 0.0000
6 ENSG00000196143 OR11H13P olfactory receptor family 11 subfamily H member 13 pseudogene 2.0000 0.0034
7 ENSG00000200818 RNU6-1204P RNA, U6 small nuclear 1204, pseudogene 2.0000 0.0000
8 ENSG00000206999 RNU6-622P RNA, U6 small nuclear 622, pseudogene 2.0000 0.0034
9 ENSG00000223543 TCEAL4P1 transcription elongation factor A like 4 pseudogene 1 2.0000 0.0034
10 ENSG00000224488 SAMM50P1 SAMM50 sorting and assembly machinery component pseudogene 1 2.0000 0.0034

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000163686 ABHD6 abhydrolase domain containing 6 -1.6119 0.0000
63340 ENSG00000278965 tec -1.6118 0.0000
63339 ENSG00000211934 IGHV1-2 immunoglobulin heavy variable 1-2 -1.6113 0.1953
63338 ENSG00000214305 NA -1.6103 0.0000
63337 ENSG00000261543 novel transcript, antisense to ISLR -1.6100 0.0000
63336 ENSG00000125903 DEFB129 defensin beta 129 -1.6094 0.0000
63335 ENSG00000123472 ATPAF1 ATP synthase mitochondrial F1 complex assembly factor 1 -1.6079 0.0000
63334 ENSG00000250321 pseudogene similar to part of ribosomal protein S17 (RPS17) -1.6075 0.0000
63333 ENSG00000261580 ENPP7P13 ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 13 -1.6073 0.0018
63332 ENSG00000260593 novel transcript, antisense to MARVELD3 -1.6068 0.0001

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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