Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481612

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481612


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M85Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000223698 GOLGA6L11P golgin A6 family like 11, pseudogene 2.3219 0.0008
2 ENSG00000226726 TMEM256P2 transmembrane protein 256 pseudogene 2 2.3219 0.0008
3 ENSG00000270207 novel transcript, antisense to GRM7 2.1073 0.0000
4 ENSG00000144063 MALL mal, T cell differentiation protein like 2.0000 0.0049
5 ENSG00000186038 HTR3E 5-hydroxytryptamine receptor 3E 2.0000 0.0049
6 ENSG00000187999 HNRNPA1P61 heterogeneous nuclear ribonucleoprotein A1 pseudogene 61 2.0000 0.0049
7 ENSG00000198283 OR5B21 olfactory receptor family 5 subfamily B member 21 2.0000 0.0000
8 ENSG00000199285 Y RNA 2.0000 0.0049
9 ENSG00000203758 OR10T1P olfactory receptor family 10 subfamily T member 1 pseudogene 2.0000 0.0049
10 ENSG00000210678 RNU6ATAC2P RNA, U6atac small nuclear 2, pseudogene 2.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000236866 novel transcript -1.5850 1.0000
63127 ENSG00000236451 novel transcript -1.5850 0.1476
63126 ENSG00000236217 C1DP2 C1D nuclear receptor corepressor pseudogene 2 -1.5850 1.0000
63125 ENSG00000236187 GJA6P gap junction protein alpha 6, pseudogene -1.5850 1.0000
63124 ENSG00000236146 novel pseudogene -1.5850 0.5982
63123 ENSG00000235967 COX5BP3 cytochrome c oxidase subunit 5B pseudogene 3 -1.5850 1.0000
63122 ENSG00000235922 ribosomal protein L13 (RPL13) pseudogene -1.5850 1.0000
63121 ENSG00000235916 MRPS18CP7 MRPS18C pseudogene 7 -1.5850 1.0000
63120 ENSG00000235904 RBMS3-AS3 RBMS3 antisense RNA 3 -1.5850 0.2294
63119 ENSG00000235880 novel transcript -1.5850 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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