SHOGoiN Cell Methylome: GSM2481612

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481612


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M85Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000223698 GOLGA6L11P golgin A6 family like 11, pseudogene 2.3219 0.0008
2 ENSG00000226726 TMEM256P2 transmembrane protein 256 pseudogene 2 2.3219 0.0008
3 ENSG00000270207 novel transcript, antisense to GRM7 2.1073 0.0000
4 ENSG00000144063 MALL mal, T cell differentiation protein like 2.0000 0.0049
5 ENSG00000186038 HTR3E 5-hydroxytryptamine receptor 3E 2.0000 0.0049
6 ENSG00000187999 HNRNPA1P61 heterogeneous nuclear ribonucleoprotein A1 pseudogene 61 2.0000 0.0049
7 ENSG00000198283 OR5B21 olfactory receptor family 5 subfamily B member 21 2.0000 0.0000
8 ENSG00000199285 NA 2.0000 0.0049
9 ENSG00000203758 OR10T1P olfactory receptor family 10 subfamily T member 1 pseudogene 2.0000 0.0049
10 ENSG00000210678 RNU6ATAC2P RNA, U6atac small nuclear 2, pseudogene 2.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000270336 protein phosphatase 2, catalytic subunit, beta isozyme (PPP2CB) pseudogene -1.5850 1.0000
63340 ENSG00000270325 BNIP3P9 BCL2 interacting protein 3 pseudogene 9 -1.5850 0.3665
63339 ENSG00000270069 MIR222HG miR222/221 cluster host gene -1.5850 1.0000
63338 ENSG00000270017 novel transcript -1.5850 1.0000
63337 ENSG00000269825 novel transcript, sense intronic to ZNF83 -1.5850 1.0000
63336 ENSG00000269136 BRI3BPP1 BRI3 binding protein pseudogene 1 -1.5850 1.0000
63335 ENSG00000268981 novel transcript, antisense to ZNF492 -1.5850 1.0000
63334 ENSG00000268964 ERVV-2 endogenous retrovirus group V member 2, envelope -1.5850 1.0000
63333 ENSG00000268295 POLR3GP1 RNA polymerase III subunit G pseudogene 1 -1.5850 1.0000
63332 ENSG00000268104 SLC6A14 solute carrier family 6 member 14 -1.5850 0.5982

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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