SHOGoiN Cell Methylome: GSM2481612
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481612 Profile download | 7020007000000000000000-780 | Sequence Read Archive | SRP074598 | SRP074598_M85 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | TE | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000223698 | GOLGA6L11P | golgin A6 family like 11, pseudogene | 2.3219 | 0.0008 |
| 2 | ENSG00000226726 | TMEM256P2 | transmembrane protein 256 pseudogene 2 | 2.3219 | 0.0008 |
| 3 | ENSG00000270207 | novel transcript, antisense to GRM7 | 2.1073 | 0.0000 | |
| 4 | ENSG00000144063 | MALL | mal, T cell differentiation protein like | 2.0000 | 0.0049 |
| 5 | ENSG00000186038 | HTR3E | 5-hydroxytryptamine receptor 3E | 2.0000 | 0.0049 |
| 6 | ENSG00000187999 | HNRNPA1P61 | heterogeneous nuclear ribonucleoprotein A1 pseudogene 61 | 2.0000 | 0.0049 |
| 7 | ENSG00000198283 | OR5B21 | olfactory receptor family 5 subfamily B member 21 | 2.0000 | 0.0000 |
| 8 | ENSG00000199285 | NA | 2.0000 | 0.0049 | |
| 9 | ENSG00000203758 | OR10T1P | olfactory receptor family 10 subfamily T member 1 pseudogene | 2.0000 | 0.0049 |
| 10 | ENSG00000210678 | RNU6ATAC2P | RNA, U6atac small nuclear 2, pseudogene | 2.0000 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000270336 | protein phosphatase 2, catalytic subunit, beta isozyme (PPP2CB) pseudogene | -1.5850 | 1.0000 | |
| 63340 | ENSG00000270325 | BNIP3P9 | BCL2 interacting protein 3 pseudogene 9 | -1.5850 | 0.3665 |
| 63339 | ENSG00000270069 | MIR222HG | miR222/221 cluster host gene | -1.5850 | 1.0000 |
| 63338 | ENSG00000270017 | novel transcript | -1.5850 | 1.0000 | |
| 63337 | ENSG00000269825 | novel transcript, sense intronic to ZNF83 | -1.5850 | 1.0000 | |
| 63336 | ENSG00000269136 | BRI3BPP1 | BRI3 binding protein pseudogene 1 | -1.5850 | 1.0000 |
| 63335 | ENSG00000268981 | novel transcript, antisense to ZNF492 | -1.5850 | 1.0000 | |
| 63334 | ENSG00000268964 | ERVV-2 | endogenous retrovirus group V member 2, envelope | -1.5850 | 1.0000 |
| 63333 | ENSG00000268295 | POLR3GP1 | RNA polymerase III subunit G pseudogene 1 | -1.5850 | 1.0000 |
| 63332 | ENSG00000268104 | SLC6A14 | solute carrier family 6 member 14 | -1.5850 | 0.5982 |
