Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481612

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2481612 Profile download	7020007000000000000000-780	Sequence Read Archive	SRP074598	SRP074598_M85	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	TE	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000223698	GOLGA6L11P	golgin A6 family like 11, pseudogene	2.3219	0.0008
2	ENSG00000226726	TMEM256P2	transmembrane protein 256 pseudogene 2	2.3219	0.0008
3	ENSG00000270207		novel transcript, antisense to GRM7	2.1073	0.0000
4	ENSG00000144063	MALL	mal, T cell differentiation protein like	2.0000	0.0049
5	ENSG00000186038	HTR3E	5-hydroxytryptamine receptor 3E	2.0000	0.0049
6	ENSG00000187999	HNRNPA1P61	heterogeneous nuclear ribonucleoprotein A1 pseudogene 61	2.0000	0.0049
7	ENSG00000198283	OR5B21	olfactory receptor family 5 subfamily B member 21	2.0000	0.0000
8	ENSG00000199285		Y RNA	2.0000	0.0049
9	ENSG00000203758	OR10T1P	olfactory receptor family 10 subfamily T member 1 pseudogene	2.0000	0.0049
10	ENSG00000210678	RNU6ATAC2P	RNA, U6atac small nuclear 2, pseudogene	2.0000	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000236866		novel transcript	-1.5850	1.0000
63127	ENSG00000236451		novel transcript	-1.5850	0.1476
63126	ENSG00000236217	C1DP2	C1D nuclear receptor corepressor pseudogene 2	-1.5850	1.0000
63125	ENSG00000236187	GJA6P	gap junction protein alpha 6, pseudogene	-1.5850	1.0000
63124	ENSG00000236146		novel pseudogene	-1.5850	0.5982
63123	ENSG00000235967	COX5BP3	cytochrome c oxidase subunit 5B pseudogene 3	-1.5850	1.0000
63122	ENSG00000235922		ribosomal protein L13 (RPL13) pseudogene	-1.5850	1.0000
63121	ENSG00000235916	MRPS18CP7	MRPS18C pseudogene 7	-1.5850	1.0000
63120	ENSG00000235904	RBMS3-AS3	RBMS3 antisense RNA 3	-1.5850	0.2294
63119	ENSG00000235880		novel transcript	-1.5850	1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

Now loading...