Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2481612
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481612
Profile download
7020007000000000000000-780
Sequence Read Archive
SRP074598
SRP074598_M85
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
TE
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000223698
GOLGA6L11P
golgin A6 family like 11, pseudogene
2.3219
0.0008
2
ENSG00000226726
TMEM256P2
transmembrane protein 256 pseudogene 2
2.3219
0.0008
3
ENSG00000270207
novel transcript, antisense to GRM7
2.1073
0.0000
4
ENSG00000144063
MALL
mal, T cell differentiation protein like
2.0000
0.0049
5
ENSG00000186038
HTR3E
5-hydroxytryptamine receptor 3E
2.0000
0.0049
6
ENSG00000187999
HNRNPA1P61
heterogeneous nuclear ribonucleoprotein A1 pseudogene 61
2.0000
0.0049
7
ENSG00000198283
OR5B21
olfactory receptor family 5 subfamily B member 21
2.0000
0.0000
8
ENSG00000199285
Y RNA
2.0000
0.0049
9
ENSG00000203758
OR10T1P
olfactory receptor family 10 subfamily T member 1 pseudogene
2.0000
0.0049
10
ENSG00000210678
RNU6ATAC2P
RNA, U6atac small nuclear 2, pseudogene
2.0000
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000236866
novel transcript
-1.5850
1.0000
63127
ENSG00000236451
novel transcript
-1.5850
0.1476
63126
ENSG00000236217
C1DP2
C1D nuclear receptor corepressor pseudogene 2
-1.5850
1.0000
63125
ENSG00000236187
GJA6P
gap junction protein alpha 6, pseudogene
-1.5850
1.0000
63124
ENSG00000236146
novel pseudogene
-1.5850
0.5982
63123
ENSG00000235967
COX5BP3
cytochrome c oxidase subunit 5B pseudogene 3
-1.5850
1.0000
63122
ENSG00000235922
ribosomal protein L13 (RPL13) pseudogene
-1.5850
1.0000
63121
ENSG00000235916
MRPS18CP7
MRPS18C pseudogene 7
-1.5850
1.0000
63120
ENSG00000235904
RBMS3-AS3
RBMS3 antisense RNA 3
-1.5850
0.2294
63119
ENSG00000235880
novel transcript
-1.5850
1.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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