Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481613

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481613


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M86Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000277701 novel transcript 2.8074 0.0000
2 ENSG00000251464 RPL7L1P13 ribosomal protein L7 like 1 pseudogene 13 2.5850 0.0001
3 ENSG00000243023 UBA52P3 ubiquitin A-52 residue ribosomal protein fusion product 1 pseudogene 3 2.3219 0.0006
4 ENSG00000249917 LINC00536 long intergenic non-protein coding RNA 536 2.3219 0.0000
5 ENSG00000265617 MIR548AG2 microRNA 548ag-2 2.3219 0.0006
6 ENSG00000277837 novel transcript 2.3219 0.0006
7 ENSG00000231802 DNAJB6P3 DNAJB6 pseudogene 3 2.2516 0.0000
8 ENSG00000005893 LAMP2 lysosomal associated membrane protein 2 2.0000 0.0038
9 ENSG00000062096 ARSF arylsulfatase F 2.0000 0.0038
10 ENSG00000087299 L2HGDH L-2-hydroxyglutarate dehydrogenase 2.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000230707 novel protein (LOC389895) -1.6962 0.0000
63127 ENSG00000113013 HSPA9 heat shock protein family A (Hsp70) member 9 -1.6961 0.0000
63126 ENSG00000158050 DUSP2 dual specificity phosphatase 2 -1.6959 0.0000
63125 ENSG00000217770 FEM1AP3 fem-1 homolog A pseudogene 3 -1.6959 0.0000
63124 ENSG00000234695 TFPI2-DT TFPI2 divergent transcript -1.6953 1.0000
63123 ENSG00000105825 TFPI2 tissue factor pathway inhibitor 2 -1.6953 1.0000
63122 ENSG00000236654 chromosome 5 open reading frame 13 (C5orf13) pseudogene -1.6950 0.0000
63121 ENSG00000269956 MKNK1-AS1 MKNK1 antisense RNA 1 -1.6948 0.0000
63120 ENSG00000234626 novel transcript -1.6946 0.0002
63119 ENSG00000267634 RPL7L1P5 ribosomal protein L7 like 1 pseudogene 5 -1.6943 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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