SHOGoiN Cell Methylome: GSM2481613

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481613


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M86Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000277701 novel transcript 2.8074 0.0000
2 ENSG00000251464 RPL7L1P13 ribosomal protein L7 like 1 pseudogene 13 2.5850 0.0001
3 ENSG00000243023 UBA52P3 ubiquitin A-52 residue ribosomal protein fusion product 1 pseudogene 3 2.3219 0.0006
4 ENSG00000249917 LINC00536 long intergenic non-protein coding RNA 536 2.3219 0.0000
5 ENSG00000265617 MIR548AG2 microRNA 548ag-2 2.3219 0.0006
6 ENSG00000277837 novel transcript 2.3219 0.0006
7 ENSG00000231802 DnaJ (Hsp40) homolog, subfamily B, member 6 (DNAJB6) pseudogene 2.2516 0.0000
8 ENSG00000005893 LAMP2 lysosomal associated membrane protein 2 2.0000 0.0038
9 ENSG00000062096 ARSF arylsulfatase F 2.0000 0.0038
10 ENSG00000087299 L2HGDH L-2-hydroxyglutarate dehydrogenase 2.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000251767 RNU7-8P RNA, U7 small nuclear 8 pseudogene -1.7925 1.0000
63340 ENSG00000237682 protein kinase C, iota (PRKCI) pseudogene -1.7925 1.0000
63339 ENSG00000232060 SLC4A1APP1 solute carrier family 4 member 1 adaptor protein pseudogene 1 -1.7925 1.0000
63338 ENSG00000230747 novel transcript -1.7925 0.3790
63337 ENSG00000223949 ROR1-AS1 ROR1 antisense RNA 1 -1.7925 0.5991
63336 ENSG00000221287 MIR1289-2 microRNA 1289-2 -1.7925 0.1496
63335 ENSG00000216523 novel pseudogene -1.7925 0.2341
63334 ENSG00000211568 MIR670 microRNA 670 -1.7925 1.0000
63333 ENSG00000207496 SNORA7A small nucleolar RNA, H/ACA box 7A -1.7925 0.1496
63332 ENSG00000201033 RNU1-96P RNA, U1 small nuclear 96, pseudogene -1.7925 0.5991

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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