SHOGoiN Cell Methylome: GSM2481614

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481614


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5030203000000000000000-761Sequence Read ArchiveSRP074598SRP074598_M87Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMetaphase II oocyteHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000243593 LINC02049 long intergenic non-protein coding RNA 2049 3.1699 0.0000
2 ENSG00000208023 MIR185 microRNA 185 2.8281 0.0000
3 ENSG00000182853 VMO1 vitelline membrane outer layer 1 homolog 2.5850 0.0000
4 ENSG00000224001 ADP-ribosylation factor-like 8B (ARL8B) pseudogene 2.5850 0.0000
5 ENSG00000227489 novel transcript 2.5850 0.0000
6 ENSG00000229855 novel transcript 2.5850 0.0000
7 ENSG00000252994 RNU6-1231P RNA, U6 small nuclear 1231, pseudogene 2.5850 0.0000
8 ENSG00000253687 novel transcript 2.5850 0.0000
9 ENSG00000279674 TEC 2.5850 0.0000
10 ENSG00000280254 TEC 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000075420 FNDC3B fibronectin type III domain containing 3B -1.9367 0.0196
63340 ENSG00000130487 KLHDC7B kelch domain containing 7B -1.9364 0.0090
63339 ENSG00000113583 C5orf15 chromosome 5 open reading frame 15 -1.9332 0.0009
63338 ENSG00000200431 RNU4-81P RNA, U4 small nuclear 81, pseudogene -1.9325 0.5467
63337 ENSG00000272682 novel transcript -1.9324 0.0006
63336 ENSG00000231086 TSSK1A testis specific serine kinase 1A, pseudogene -1.9324 0.0006
63335 ENSG00000206203 TSSK2 testis specific serine kinase 2 -1.9324 0.0006
63334 ENSG00000237057 LINC02087 long intergenic non-protein coding RNA 2087 -1.9315 0.0527
63333 ENSG00000120008 WDR11 WD repeat domain 11 -1.9289 0.0223
63332 ENSG00000280302 TEC -1.9283 0.0732

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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