Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481614

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481614


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5030203000000000000000-761Sequence Read ArchiveSRP074598SRP074598_M87Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMetaphase II oocyteHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000243593 LINC02049 long intergenic non-protein coding RNA 2049 3.1699 0.0000
2 ENSG00000208023 MIR185 microRNA 185 2.8281 0.0000
3 ENSG00000182853 VMO1 vitelline membrane outer layer 1 homolog 2.5850 0.0000
4 ENSG00000224001 ADP-ribosylation factor-like 8B (ARL8B) pseudogene 2.5850 0.0000
5 ENSG00000227489 novel transcript 2.5850 0.0000
6 ENSG00000229855 novel transcript 2.5850 0.0000
7 ENSG00000252994 RNU6-1231P RNA, U6 small nuclear 1231, pseudogene 2.5850 0.0000
8 ENSG00000253687 novel transcript 2.5850 0.0000
9 ENSG00000279674 TEC 2.5850 0.0000
10 ENSG00000280254 TEC 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000284300 mitochondrially encoded NADH dehydrogenase 3 (MT-ND3) pseudogene -1.7948 0.4380
63127 ENSG00000284263 mitochondrially encoded NADH dehydrogenase 4 (MT-ND4) pseudogene -1.7948 0.4380
63126 ENSG00000231521 novel transcript -1.7935 0.0051
63125 ENSG00000253239 IGLVI-70 immunoglobulin lambda variable (I)-70 (pseudogene) -1.7932 0.6189
63124 ENSG00000211637 IGLV4-69 immunoglobulin lambda variable 4-69 -1.7932 0.6189
63123 ENSG00000284592 novel SLAM family member pseudogene -1.7925 1.0000
63122 ENSG00000280125 novel transcript -1.7925 1.0000
63121 ENSG00000261418 HERC2P6 hect domain and RLD 2 pseudogene 6 -1.7925 1.0000
63120 ENSG00000254507 DEFB131E defensin beta 131E (pseudogene) -1.7925 1.0000
63119 ENSG00000254449 SF3A3P2 splicing factor 3a, subunit 3 pseudogene 2 -1.7925 0.6303

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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