Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481615

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2481615 Profile download	5030203000000000000000-761	Sequence Read Archive	SRP074598	SRP074598_M88	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Metaphase II oocyte	Human	Genitalia	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000242163		ribosomal protein S24 (RPS24) pseudogene	2.8074	0.0000
2	ENSG00000251456		novel transcript	2.8074	0.0000
3	ENSG00000034239	EFCAB1	EF-hand calcium binding domain 1	2.5850	0.0000
4	ENSG00000227233	CICP17	capicua transcriptional repressor pseudogene 17	2.5850	0.0000
5	ENSG00000243593	LINC02049	long intergenic non-protein coding RNA 2049	2.5850	0.0000
6	ENSG00000254021		novel transcript	2.5850	0.0000
8	ENSG00000258344		novel transcript, sense overlapping to COPZ1 & HNRNPA1	2.5850	0.0000
9	ENSG00000179219	LINC00311	long intergenic non-protein coding RNA 311	2.3219	0.0000
10	ENSG00000198862	LTN1	listerin E3 ubiquitin protein ligase 1	2.3219	0.0000
63119	ENSG00000223486		novel transcript	-1.5850	0.6160

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000225101	OR52K3P	olfactory receptor family 52 subfamily K member 3 pseudogene	-1.5850	1.0000
63127	ENSG00000224980	RPL23AP85	ribosomal protein L23a pseudogene 85	-1.5850	0.0142
63126	ENSG00000224924	LINC00320	long intergenic non-protein coding RNA 320	-1.5850	1.0000
63125	ENSG00000224769	MUC20P1	mucin 20, cell surface associated pseudogene 1	-1.5850	1.0000
63124	ENSG00000224607	IGKV1D-27	immunoglobulin kappa variable 1D-27 (pseudogene)	-1.5850	1.0000
63123	ENSG00000224365		vitamin K epoxide reductase complex, subunit 1-like 1 (Vkorc1l1) pseudogene	-1.5850	1.0000
63122	ENSG00000223709	TRIM64EP	tripartite motif containing 64E, pseudogene	-1.5850	1.0000
63121	ENSG00000223688	RPS24P14	ribosomal protein S24 pseudogene 14	-1.5850	1.0000
63120	ENSG00000223505	RPL35AP5	ribosomal protein L35a pseudogene 5	-1.5850	1.0000
63119	ENSG00000223486		novel transcript	-1.5850	0.6160

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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