SHOGoiN Cell Methylome: GSM2481615

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481615


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5030203000000000000000-761Sequence Read ArchiveSRP074598SRP074598_M88Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMetaphase II oocyteHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000242163 ribosomal protein S24 (RPS24) pseudogene 2.8074 0.0000
2 ENSG00000251456 novel transcript 2.8074 0.0000
3 ENSG00000034239 EFCAB1 EF-hand calcium binding domain 1 2.5850 0.0000
4 ENSG00000227233 CICP17 capicua transcriptional repressor pseudogene 17 2.5850 0.0000
5 ENSG00000243593 LINC02049 long intergenic non-protein coding RNA 2049 2.5850 0.0000
6 ENSG00000254021 novel transcript 2.5850 0.0000
7 ENSG00000254615 novel transcript 2.5850 0.0000
8 ENSG00000258344 novel transcript, sense overlapping to COPZ1 & HNRNPA1 2.5850 0.0000
9 ENSG00000179219 LINC00311 long intergenic non-protein coding RNA 311 2.3219 0.0000
10 ENSG00000198862 LTN1 listerin E3 ubiquitin protein ligase 1 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000276399 novel transcript, piRNA host -1.5850 0.6160
63340 ENSG00000276098 aurora kinase A interacting protein 1 (AURKAIP1) pseudogene -1.5850 1.0000
63339 ENSG00000275866 testis specific protein, Y-linked 1 (TSPY1) pseudogene -1.5850 1.0000
63338 ENSG00000274988 MIR6876 microRNA 6876 -1.5850 0.6235
63337 ENSG00000274930 ankyrin repeat domain 26 (ANKRD26) pseudogene -1.5850 1.0000
63336 ENSG00000274775 fibrous sheath interacting protein 2 (FSIP2) pseudogene -1.5850 1.0000
63335 ENSG00000274560 novel transcript -1.5850 1.0000
63333 ENSG00000274033 novel zinc finger protein pseudogene -1.5850 1.0000
63332 ENSG00000273732 VN1R74P vomeronasal 1 receptor 74 pseudogene -1.5850 1.0000
10 ENSG00000198862 LTN1 listerin E3 ubiquitin protein ligase 1 2.3219 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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