Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM2481615
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481615
Profile download
5030203000000000000000-761
Sequence Read Archive
SRP074598
SRP074598_M88
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Metaphase II oocyte
Human
Genitalia
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000242163
ribosomal protein S24 (RPS24) pseudogene
2.8074
0.0000
2
ENSG00000251456
novel transcript
2.8074
0.0000
3
ENSG00000034239
EFCAB1
EF-hand calcium binding domain 1
2.5850
0.0000
4
ENSG00000227233
CICP17
capicua transcriptional repressor pseudogene 17
2.5850
0.0000
5
ENSG00000243593
LINC02049
long intergenic non-protein coding RNA 2049
2.5850
0.0000
6
ENSG00000254021
novel transcript
2.5850
0.0000
8
ENSG00000258344
novel transcript, sense overlapping to COPZ1 & HNRNPA1
2.5850
0.0000
9
ENSG00000179219
LINC00311
long intergenic non-protein coding RNA 311
2.3219
0.0000
10
ENSG00000198862
LTN1
listerin E3 ubiquitin protein ligase 1
2.3219
0.0000
63119
ENSG00000223486
novel transcript
-1.5850
0.6160
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000225101
OR52K3P
olfactory receptor family 52 subfamily K member 3 pseudogene
-1.5850
1.0000
63127
ENSG00000224980
RPL23AP85
ribosomal protein L23a pseudogene 85
-1.5850
0.0142
63126
ENSG00000224924
LINC00320
long intergenic non-protein coding RNA 320
-1.5850
1.0000
63125
ENSG00000224769
MUC20P1
mucin 20, cell surface associated pseudogene 1
-1.5850
1.0000
63124
ENSG00000224607
IGKV1D-27
immunoglobulin kappa variable 1D-27 (pseudogene)
-1.5850
1.0000
63123
ENSG00000224365
vitamin K epoxide reductase complex, subunit 1-like 1 (Vkorc1l1) pseudogene
-1.5850
1.0000
63122
ENSG00000223709
TRIM64EP
tripartite motif containing 64E, pseudogene
-1.5850
1.0000
63121
ENSG00000223688
RPS24P14
ribosomal protein S24 pseudogene 14
-1.5850
1.0000
63120
ENSG00000223505
RPL35AP5
ribosomal protein L35a pseudogene 5
-1.5850
1.0000
63119
ENSG00000223486
novel transcript
-1.5850
0.6160
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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