Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481615

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481615


Profile download
5030203000000000000000-761Sequence Read ArchiveSRP074598SRP074598_M88Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMetaphase II oocyteHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000242163 ribosomal protein S24 (RPS24) pseudogene 2.8074 0.0000
2 ENSG00000251456 novel transcript 2.8074 0.0000
3 ENSG00000034239 EFCAB1 EF-hand calcium binding domain 1 2.5850 0.0000
4 ENSG00000227233 CICP17 capicua transcriptional repressor pseudogene 17 2.5850 0.0000
5 ENSG00000243593 LINC02049 long intergenic non-protein coding RNA 2049 2.5850 0.0000
6 ENSG00000254021 novel transcript 2.5850 0.0000
8 ENSG00000258344 novel transcript, sense overlapping to COPZ1 & HNRNPA1 2.5850 0.0000
9 ENSG00000179219 LINC00311 long intergenic non-protein coding RNA 311 2.3219 0.0000
10 ENSG00000198862 LTN1 listerin E3 ubiquitin protein ligase 1 2.3219 0.0000
63119 ENSG00000223486 novel transcript -1.5850 0.6160

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000225101 OR52K3P olfactory receptor family 52 subfamily K member 3 pseudogene -1.5850 1.0000
63127 ENSG00000224980 RPL23AP85 ribosomal protein L23a pseudogene 85 -1.5850 0.0142
63126 ENSG00000224924 LINC00320 long intergenic non-protein coding RNA 320 -1.5850 1.0000
63125 ENSG00000224769 MUC20P1 mucin 20, cell surface associated pseudogene 1 -1.5850 1.0000
63124 ENSG00000224607 IGKV1D-27 immunoglobulin kappa variable 1D-27 (pseudogene) -1.5850 1.0000
63123 ENSG00000224365 vitamin K epoxide reductase complex, subunit 1-like 1 (Vkorc1l1) pseudogene -1.5850 1.0000
63122 ENSG00000223709 TRIM64EP tripartite motif containing 64E, pseudogene -1.5850 1.0000
63121 ENSG00000223688 RPS24P14 ribosomal protein S24 pseudogene 14 -1.5850 1.0000
63120 ENSG00000223505 RPL35AP5 ribosomal protein L35a pseudogene 5 -1.5850 1.0000
63119 ENSG00000223486 novel transcript -1.5850 0.6160

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...