SHOGoiN Cell Methylome: GSM2481615
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481615 Profile download | 5030203000000000000000-761 | Sequence Read Archive | SRP074598 | SRP074598_M88 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Metaphase II oocyte | Human | Genitalia | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000242163 | ribosomal protein S24 (RPS24) pseudogene | 2.8074 | 0.0000 | |
| 2 | ENSG00000251456 | novel transcript | 2.8074 | 0.0000 | |
| 3 | ENSG00000034239 | EFCAB1 | EF-hand calcium binding domain 1 | 2.5850 | 0.0000 |
| 4 | ENSG00000227233 | CICP17 | capicua transcriptional repressor pseudogene 17 | 2.5850 | 0.0000 |
| 5 | ENSG00000243593 | LINC02049 | long intergenic non-protein coding RNA 2049 | 2.5850 | 0.0000 |
| 6 | ENSG00000254021 | novel transcript | 2.5850 | 0.0000 | |
| 7 | ENSG00000254615 | novel transcript | 2.5850 | 0.0000 | |
| 8 | ENSG00000258344 | novel transcript, sense overlapping to COPZ1 & HNRNPA1 | 2.5850 | 0.0000 | |
| 9 | ENSG00000179219 | LINC00311 | long intergenic non-protein coding RNA 311 | 2.3219 | 0.0000 |
| 10 | ENSG00000198862 | LTN1 | listerin E3 ubiquitin protein ligase 1 | 2.3219 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000276399 | novel transcript, piRNA host | -1.5850 | 0.6160 | |
| 63340 | ENSG00000276098 | aurora kinase A interacting protein 1 (AURKAIP1) pseudogene | -1.5850 | 1.0000 | |
| 63339 | ENSG00000275866 | testis specific protein, Y-linked 1 (TSPY1) pseudogene | -1.5850 | 1.0000 | |
| 63338 | ENSG00000274988 | MIR6876 | microRNA 6876 | -1.5850 | 0.6235 |
| 63337 | ENSG00000274930 | ankyrin repeat domain 26 (ANKRD26) pseudogene | -1.5850 | 1.0000 | |
| 63336 | ENSG00000274775 | fibrous sheath interacting protein 2 (FSIP2) pseudogene | -1.5850 | 1.0000 | |
| 63335 | ENSG00000274560 | novel transcript | -1.5850 | 1.0000 | |
| 63333 | ENSG00000274033 | novel zinc finger protein pseudogene | -1.5850 | 1.0000 | |
| 63332 | ENSG00000273732 | VN1R74P | vomeronasal 1 receptor 74 pseudogene | -1.5850 | 1.0000 |
| 10 | ENSG00000198862 | LTN1 | listerin E3 ubiquitin protein ligase 1 | 2.3219 | 0.0000 |
