Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481617

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481617


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5090101000001000000000-236Sequence Read ArchiveSRP074598SRP074598_M90Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeSpermHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000188051 TMEM221 transmembrane protein 221 3.1699 0.0297
2 ENSG00000102003 SYP synaptophysin 3.0609 0.0000
3 ENSG00000237341 SYP-AS1 SYP antisense RNA 1 3.0609 0.0000
4 ENSG00000126231 PROZ protein Z, vitamin K dependent plasma glycoprotein 3.0000 0.0000
5 ENSG00000283828 novel transcript, antisense to F10 3.0000 0.0000
6 ENSG00000212609 RNU1-139P RNA, U1 small nuclear 139, pseudogene 2.8074 0.0910
7 ENSG00000269887 novel transcript, sense intronic to PBX1 2.8074 0.0003
8 ENSG00000274263 MIR7702 microRNA 7702 2.8074 0.0910
9 ENSG00000137628 DDX60 DExD/H-box helicase 60 2.7925 0.0053
10 ENSG00000196344 ADH7 alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide 2.7740 0.0003

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000252271 RNU6-1110P RNA, U6 small nuclear 1110, pseudogene -1.0000 0.3712
63127 ENSG00000252190 NA -1.0000 0.3712
63126 ENSG00000252188 NA -1.0000 0.0511
63125 ENSG00000252083 NA -1.0000 0.3712
63124 ENSG00000251828 NA -1.0000 0.0026
63123 ENSG00000251751 RN7SKP46 RN7SK pseudogene 46 -1.0000 0.3712
63122 ENSG00000251151 HOXC-AS3 HOXC cluster antisense RNA 3 -1.0000 0.3712
63121 ENSG00000250934 novel transcript -1.0000 0.3712
63120 ENSG00000250847 Rho GTPase activating protein 5 (ARHGAP5) pseudogene -1.0000 0.3712
63119 ENSG00000250608 novel transcript -1.0000 0.3712

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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