Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481618

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481618


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7010000000000000000000-772Sequence Read ArchiveSRP074598SRP074598_M91Single-cell DNA methylome sequencing of human preimplantation embryosMethylome8-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000172489 OR5T3 olfactory receptor family 5 subfamily T member 3 2.3219 0.0044
2 ENSG00000188517 COL25A1 collagen type XXV alpha 1 chain 2.3219 0.0000
3 ENSG00000196937 FAM3C FAM3 metabolism regulating signaling molecule C 2.3219 0.0044
4 ENSG00000237076 novel transcript 2.3219 0.0044
5 ENSG00000260631 RBM22P12 RNA binding motif protein 22 pseudogene 12 2.3219 0.0044
6 ENSG00000277425 novel transcript 2.3219 0.0000
7 ENSG00000278816 novel transcript 2.3219 0.0000
8 ENSG00000279581 novel transcript 2.3219 0.0000
9 ENSG00000171603 CLSTN1 calsyntenin 1 2.2414 0.0000
10 ENSG00000225187 novel transcript 2.1331 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000234030 TMEM97P1 transmembrane protein 97 pseudogene 1 -1.5595 0.0000
63127 ENSG00000171446 KRT27 keratin 27 -1.5595 0.0000
63126 ENSG00000238082 NUDCP2 nuclear distribution C pseudogene 2 -1.5584 0.0000
63125 ENSG00000204311 PJVK pejvakin -1.5584 0.0000
63124 ENSG00000180228 PRKRA protein activator of interferon induced protein kinase EIF2AK2 -1.5584 0.0000
63123 ENSG00000277437 NA -1.5581 0.0000
63122 ENSG00000206417 H1-10-AS1 H1-10 antisense RNA 1 -1.5571 0.0000
63121 ENSG00000184897 H1-10 H1.10 linker histone -1.5571 0.0000
63120 ENSG00000240375 VPS26AP1 VPS26A pseudogene 1 -1.5566 0.0448
63119 ENSG00000071073 MGAT4A alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A -1.5557 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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