SHOGoiN Cell Methylome: GSM2481618
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481618 Profile download | 7010000000000000000000-772 | Sequence Read Archive | SRP074598 | SRP074598_M91 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | 8-cell embryo | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000172489 | OR5T3 | olfactory receptor family 5 subfamily T member 3 | 2.3219 | 0.0044 |
| 2 | ENSG00000188517 | COL25A1 | collagen type XXV alpha 1 chain | 2.3219 | 0.0000 |
| 3 | ENSG00000196937 | FAM3C | family with sequence similarity 3 member C | 2.3219 | 0.0044 |
| 4 | ENSG00000237076 | novel transcript | 2.3219 | 0.0044 | |
| 5 | ENSG00000260631 | RBM22P12 | RNA binding motif protein 22 pseudogene 12 | 2.3219 | 0.0044 |
| 6 | ENSG00000277425 | novel transcript | 2.3219 | 0.0000 | |
| 7 | ENSG00000278816 | novel transcript | 2.3219 | 0.0000 | |
| 8 | ENSG00000279581 | novel transcript | 2.3219 | 0.0000 | |
| 9 | ENSG00000171603 | CLSTN1 | calsyntenin 1 | 2.2414 | 0.0000 |
| 10 | ENSG00000225187 | novel transcript | 2.1331 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000224203 | RPS23P10 | ribosomal protein S23 pseudogene 10 | -1.5850 | 0.5784 |
| 63340 | ENSG00000223800 | novel transcript | -1.5850 | 1.0000 | |
| 63339 | ENSG00000223782 | RPS21P8 | ribosomal protein S21 pseudogene 8 | -1.5850 | 0.1230 |
| 63338 | ENSG00000223746 | ELOCP30 | elongin C pseudogene 30 | -1.5850 | 1.0000 |
| 63337 | ENSG00000223389 | SDCBP2P1 | syndecan binding protein 2 pseudogene 1 | -1.5850 | 0.0003 |
| 63336 | ENSG00000223341 | RN7SKP3 | RN7SK pseudogene 3 | -1.5850 | 0.5784 |
| 63335 | ENSG00000223318 | RNA5SP111 | RNA, 5S ribosomal pseudogene 111 | -1.5850 | 1.0000 |
| 63334 | ENSG00000223271 | NA | -1.5850 | 0.3492 | |
| 63333 | ENSG00000222987 | RN7SKP68 | RN7SK pseudogene 68 | -1.5850 | 0.0000 |
| 63332 | ENSG00000222982 | RN7SKP216 | RN7SK pseudogene 216 | -1.5850 | 0.5784 |
