SHOGoiN Cell Methylome: GSM2481618

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481618


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7010000000000000000000-772Sequence Read ArchiveSRP074598SRP074598_M91Single-cell DNA methylome sequencing of human preimplantation embryosMethylome8-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000172489 OR5T3 olfactory receptor family 5 subfamily T member 3 2.3219 0.0044
2 ENSG00000188517 COL25A1 collagen type XXV alpha 1 chain 2.3219 0.0000
3 ENSG00000196937 FAM3C family with sequence similarity 3 member C 2.3219 0.0044
4 ENSG00000237076 novel transcript 2.3219 0.0044
5 ENSG00000260631 RBM22P12 RNA binding motif protein 22 pseudogene 12 2.3219 0.0044
6 ENSG00000277425 novel transcript 2.3219 0.0000
7 ENSG00000278816 novel transcript 2.3219 0.0000
8 ENSG00000279581 novel transcript 2.3219 0.0000
9 ENSG00000171603 CLSTN1 calsyntenin 1 2.2414 0.0000
10 ENSG00000225187 novel transcript 2.1331 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000224203 RPS23P10 ribosomal protein S23 pseudogene 10 -1.5850 0.5784
63340 ENSG00000223800 novel transcript -1.5850 1.0000
63339 ENSG00000223782 RPS21P8 ribosomal protein S21 pseudogene 8 -1.5850 0.1230
63338 ENSG00000223746 ELOCP30 elongin C pseudogene 30 -1.5850 1.0000
63337 ENSG00000223389 SDCBP2P1 syndecan binding protein 2 pseudogene 1 -1.5850 0.0003
63336 ENSG00000223341 RN7SKP3 RN7SK pseudogene 3 -1.5850 0.5784
63335 ENSG00000223318 RNA5SP111 RNA, 5S ribosomal pseudogene 111 -1.5850 1.0000
63334 ENSG00000223271 NA -1.5850 0.3492
63333 ENSG00000222987 RN7SKP68 RN7SK pseudogene 68 -1.5850 0.0000
63332 ENSG00000222982 RN7SKP216 RN7SK pseudogene 216 -1.5850 0.5784

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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