Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2481618
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481618
Profile download
7010000000000000000000-772
Sequence Read Archive
SRP074598
SRP074598_M91
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
8-cell embryo
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000172489
OR5T3
olfactory receptor family 5 subfamily T member 3
2.3219
0.0044
2
ENSG00000188517
COL25A1
collagen type XXV alpha 1 chain
2.3219
0.0000
3
ENSG00000196937
FAM3C
FAM3 metabolism regulating signaling molecule C
2.3219
0.0044
4
ENSG00000237076
novel transcript
2.3219
0.0044
5
ENSG00000260631
RBM22P12
RNA binding motif protein 22 pseudogene 12
2.3219
0.0044
6
ENSG00000277425
novel transcript
2.3219
0.0000
7
ENSG00000278816
novel transcript
2.3219
0.0000
8
ENSG00000279581
novel transcript
2.3219
0.0000
9
ENSG00000171603
CLSTN1
calsyntenin 1
2.2414
0.0000
10
ENSG00000225187
novel transcript
2.1331
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000234030
TMEM97P1
transmembrane protein 97 pseudogene 1
-1.5595
0.0000
63127
ENSG00000171446
KRT27
keratin 27
-1.5595
0.0000
63126
ENSG00000238082
NUDCP2
nuclear distribution C pseudogene 2
-1.5584
0.0000
63125
ENSG00000204311
PJVK
pejvakin
-1.5584
0.0000
63124
ENSG00000180228
PRKRA
protein activator of interferon induced protein kinase EIF2AK2
-1.5584
0.0000
63123
ENSG00000277437
NA
-1.5581
0.0000
63122
ENSG00000206417
H1-10-AS1
H1-10 antisense RNA 1
-1.5571
0.0000
63121
ENSG00000184897
H1-10
H1.10 linker histone
-1.5571
0.0000
63120
ENSG00000240375
VPS26AP1
VPS26A pseudogene 1
-1.5566
0.0448
63119
ENSG00000071073
MGAT4A
alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A
-1.5557
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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