SHOGoiN Cell Methylome: GSM2481619

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481619


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7010000000000000000000-772Sequence Read ArchiveSRP074598SRP074598_M92Single-cell DNA methylome sequencing of human preimplantation embryosMethylome8-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000228135 LINC01494 long intergenic non-protein coding RNA 1494 2.3219 0.0000
2 ENSG00000242673 RN7SL167P RNA, 7SL, cytoplasmic 167, pseudogene 2.3219 0.0063
3 ENSG00000264322 RN7SL448P RNA, 7SL, cytoplasmic 448, pseudogene 2.2146 0.0000
4 ENSG00000114113 RBP2 retinol binding protein 2 2.1073 0.0000
5 ENSG00000052802 MSMO1 methylsterol monooxygenase 1 2.0000 0.0000
6 ENSG00000153989 NUS1 NUS1 dehydrodolichyl diphosphate synthase subunit 2.0000 0.0222
7 ENSG00000196472 UDP glucuronosyltransferase 2 family, polypeptide A3 (UGT2A3) pseudogene 2.0000 0.0222
8 ENSG00000200331 RNU6-183P RNA, U6 small nuclear 183, pseudogene 2.0000 0.0222
9 ENSG00000200360 RNU6-792P RNA, U6 small nuclear 792, pseudogene 2.0000 0.0005
10 ENSG00000200408 RNA5SP74 RNA, 5S ribosomal pseudogene 74 2.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000167528 ZNF641 zinc finger protein 641 -1.5850 0.0252
63340 ENSG00000167139 TBC1D21 TBC1 domain family member 21 -1.5850 1.0000
63339 ENSG00000164256 PRDM9 PR/SET domain 9 -1.5850 0.1158
63338 ENSG00000163510 CWC22 CWC22 spliceosome associated protein homolog -1.5850 0.1158
63337 ENSG00000163012 ZSWIM2 zinc finger SWIM-type containing 2 -1.5850 0.0013
63336 ENSG00000161103 POM121 transmembrane nucleoporin (POM121) pseudogene -1.5850 0.5823
63335 ENSG00000160766 GBAP1 glucosylceramidase beta pseudogene 1 -1.5850 1.0000
63334 ENSG00000157551 KCNJ15 potassium voltage-gated channel subfamily J member 15 -1.5850 1.0000
63333 ENSG00000155966 AFF2 AF4/FMR2 family member 2 -1.5850 0.0001
63332 ENSG00000155542 SETD9 SET domain containing 9 -1.5850 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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