SHOGoiN Cell Methylome: GSM2481621
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481621 Profile download | 7010000000000000000000-772 | Sequence Read Archive | SRP074598 | SRP074598_M94 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | 8-cell embryo | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000132874 | SLC14A2 | solute carrier family 14 member 2 | 2.5850 | 0.0010 |
| 2 | ENSG00000218337 | pseudogene similar to part of myotubularin related protein 9 MTMR9 | 2.3219 | 0.0039 | |
| 3 | ENSG00000255239 | TREHP1 | trehalase pseudogene 1 | 2.3219 | 0.0039 |
| 4 | ENSG00000265939 | UBE2CP2 | ubiquitin conjugating enzyme E2 C pseudogene 2 | 2.3219 | 0.0000 |
| 5 | ENSG00000188056 | TREML4 | triggering receptor expressed on myeloid cells like 4 | 2.1610 | 0.0000 |
| 6 | ENSG00000254132 | MTND6P3 | MT-ND6 pseudogene 3 | 2.0058 | 0.0000 |
| 7 | ENSG00000091039 | OSBPL8 | oxysterol binding protein like 8 | 2.0000 | 0.0155 |
| 8 | ENSG00000099139 | PCSK5 | proprotein convertase subtilisin/kexin type 5 | 2.0000 | 0.0155 |
| 9 | ENSG00000142856 | ITGB3BP | integrin subunit beta 3 binding protein | 2.0000 | 0.0002 |
| 10 | ENSG00000175820 | CCDC168 | coiled-coil domain containing 168 | 2.0000 | 0.0002 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000157654 | PALM2-AKAP2 | PALM2-AKAP2 readthrough | -1.5850 | 1.0000 |
| 63340 | ENSG00000156009 | MAGEA8 | MAGE family member A8 | -1.5850 | 1.0000 |
| 63339 | ENSG00000155858 | LSM11 | LSM11, U7 small nuclear RNA associated | -1.5850 | 0.5781 |
| 63338 | ENSG00000154814 | OXNAD1 | oxidoreductase NAD binding domain containing 1 | -1.5850 | 0.0010 |
| 63337 | ENSG00000154143 | PANX3 | pannexin 3 | -1.5850 | 0.0762 |
| 63336 | ENSG00000152582 | SPEF2 | sperm flagellar 2 | -1.5850 | 0.5781 |
| 63335 | ENSG00000152219 | ARL14EP | ADP ribosylation factor like GTPase 14 effector protein | -1.5850 | 1.0000 |
| 63334 | ENSG00000151748 | SAV1 | salvador family WW domain containing protein 1 | -1.5850 | 0.0025 |
| 63333 | ENSG00000148225 | WDR31 | WD repeat domain 31 | -1.5850 | 0.0015 |
| 63332 | ENSG00000147246 | HTR2C | 5-hydroxytryptamine receptor 2C | -1.5850 | 0.0175 |
