Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481621

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481621


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7010000000000000000000-772Sequence Read ArchiveSRP074598SRP074598_M94Single-cell DNA methylome sequencing of human preimplantation embryosMethylome8-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000132874 SLC14A2 solute carrier family 14 member 2 2.5850 0.0010
2 ENSG00000218337 pseudogene similar to part of myotubularin related protein 9 MTMR9 2.3219 0.0039
3 ENSG00000255239 TREHP1 trehalase pseudogene 1 2.3219 0.0039
4 ENSG00000265939 UBE2CP2 ubiquitin conjugating enzyme E2 C pseudogene 2 2.3219 0.0000
5 ENSG00000188056 TREML4 triggering receptor expressed on myeloid cells like 4 2.1610 0.0000
6 ENSG00000254132 MTND6P3 MT-ND6 pseudogene 3 2.0058 0.0000
7 ENSG00000091039 OSBPL8 oxysterol binding protein like 8 2.0000 0.0155
8 ENSG00000099139 PCSK5 proprotein convertase subtilisin/kexin type 5 2.0000 0.0155
9 ENSG00000142856 ITGB3BP integrin subunit beta 3 binding protein 2.0000 0.0002
10 ENSG00000175820 CCDC168 coiled-coil domain containing 168 2.0000 0.0002

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000151650 VENTX VENT homeobox -1.4596 0.0017
63127 ENSG00000254230 novel transcript -1.4573 0.0000
63126 ENSG00000261719 integrator complex subunit 4-like (INTS4L2) pseudogene -1.4563 0.0094
63125 ENSG00000234371 RPSAP31 ribosomal protein SA pseudogene 31 -1.4550 0.0175
63124 ENSG00000233347 ERP29P1 endoplasmic reticulum lumenal protein 29 pseudogene 1 -1.4550 0.0001
63123 ENSG00000105135 ILVBL ilvB acetolactate synthase like -1.4550 0.0175
63122 ENSG00000230068 CDC42-IT1 CDC42 intronic transcript 1 -1.4545 0.0000
63121 ENSG00000250742 LINC02381 long intergenic non-protein coding RNA 2381 -1.4528 0.0480
63120 ENSG00000250432 FAM242C family with sequence similarity 242 member C -1.4528 0.0480
63119 ENSG00000134852 CLOCK clock circadian regulator -1.4525 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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