Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
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Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM2481621
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481621
Profile download
7010000000000000000000-772
Sequence Read Archive
SRP074598
SRP074598_M94
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
8-cell embryo
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000132874
SLC14A2
solute carrier family 14 member 2
2.5850
0.0010
2
ENSG00000218337
pseudogene similar to part of myotubularin related protein 9 MTMR9
2.3219
0.0039
3
ENSG00000255239
TREHP1
trehalase pseudogene 1
2.3219
0.0039
4
ENSG00000265939
UBE2CP2
ubiquitin conjugating enzyme E2 C pseudogene 2
2.3219
0.0000
5
ENSG00000188056
TREML4
triggering receptor expressed on myeloid cells like 4
2.1610
0.0000
6
ENSG00000254132
MTND6P3
MT-ND6 pseudogene 3
2.0058
0.0000
7
ENSG00000091039
OSBPL8
oxysterol binding protein like 8
2.0000
0.0155
8
ENSG00000099139
PCSK5
proprotein convertase subtilisin/kexin type 5
2.0000
0.0155
9
ENSG00000142856
ITGB3BP
integrin subunit beta 3 binding protein
2.0000
0.0002
10
ENSG00000175820
CCDC168
coiled-coil domain containing 168
2.0000
0.0002
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000151650
VENTX
VENT homeobox
-1.4596
0.0017
63127
ENSG00000254230
novel transcript
-1.4573
0.0000
63126
ENSG00000261719
integrator complex subunit 4-like (INTS4L2) pseudogene
-1.4563
0.0094
63125
ENSG00000234371
RPSAP31
ribosomal protein SA pseudogene 31
-1.4550
0.0175
63124
ENSG00000233347
ERP29P1
endoplasmic reticulum lumenal protein 29 pseudogene 1
-1.4550
0.0001
63123
ENSG00000105135
ILVBL
ilvB acetolactate synthase like
-1.4550
0.0175
63122
ENSG00000230068
CDC42-IT1
CDC42 intronic transcript 1
-1.4545
0.0000
63121
ENSG00000250742
LINC02381
long intergenic non-protein coding RNA 2381
-1.4528
0.0480
63120
ENSG00000250432
FAM242C
family with sequence similarity 242 member C
-1.4528
0.0480
63119
ENSG00000134852
CLOCK
clock circadian regulator
-1.4525
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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