Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481621

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2481621 Profile download	7010000000000000000000-772	Sequence Read Archive	SRP074598	SRP074598_M94	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	8-cell embryo	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000132874	SLC14A2	solute carrier family 14 member 2	2.5850	0.0010
2	ENSG00000218337		pseudogene similar to part of myotubularin related protein 9 MTMR9	2.3219	0.0039
3	ENSG00000255239	TREHP1	trehalase pseudogene 1	2.3219	0.0039
4	ENSG00000265939	UBE2CP2	ubiquitin conjugating enzyme E2 C pseudogene 2	2.3219	0.0000
5	ENSG00000188056	TREML4	triggering receptor expressed on myeloid cells like 4	2.1610	0.0000
6	ENSG00000254132	MTND6P3	MT-ND6 pseudogene 3	2.0058	0.0000
7	ENSG00000091039	OSBPL8	oxysterol binding protein like 8	2.0000	0.0155
8	ENSG00000099139	PCSK5	proprotein convertase subtilisin/kexin type 5	2.0000	0.0155
9	ENSG00000142856	ITGB3BP	integrin subunit beta 3 binding protein	2.0000	0.0002
10	ENSG00000175820	CCDC168	coiled-coil domain containing 168	2.0000	0.0002

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000151650	VENTX	VENT homeobox	-1.4596	0.0017
63127	ENSG00000254230		novel transcript	-1.4573	0.0000
63126	ENSG00000261719		integrator complex subunit 4-like (INTS4L2) pseudogene	-1.4563	0.0094
63125	ENSG00000234371	RPSAP31	ribosomal protein SA pseudogene 31	-1.4550	0.0175
63124	ENSG00000233347	ERP29P1	endoplasmic reticulum lumenal protein 29 pseudogene 1	-1.4550	0.0001
63123	ENSG00000105135	ILVBL	ilvB acetolactate synthase like	-1.4550	0.0175
63122	ENSG00000230068	CDC42-IT1	CDC42 intronic transcript 1	-1.4545	0.0000
63121	ENSG00000250742	LINC02381	long intergenic non-protein coding RNA 2381	-1.4528	0.0480
63120	ENSG00000250432	FAM242C	family with sequence similarity 242 member C	-1.4528	0.0480
63119	ENSG00000134852	CLOCK	clock circadian regulator	-1.4525	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

Now loading...