SHOGoiN Cell Methylome: GSM2481621

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481621


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7010000000000000000000-772Sequence Read ArchiveSRP074598SRP074598_M94Single-cell DNA methylome sequencing of human preimplantation embryosMethylome8-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000132874 SLC14A2 solute carrier family 14 member 2 2.5850 0.0010
2 ENSG00000218337 pseudogene similar to part of myotubularin related protein 9 MTMR9 2.3219 0.0039
3 ENSG00000255239 TREHP1 trehalase pseudogene 1 2.3219 0.0039
4 ENSG00000265939 UBE2CP2 ubiquitin conjugating enzyme E2 C pseudogene 2 2.3219 0.0000
5 ENSG00000188056 TREML4 triggering receptor expressed on myeloid cells like 4 2.1610 0.0000
6 ENSG00000254132 MTND6P3 MT-ND6 pseudogene 3 2.0058 0.0000
7 ENSG00000091039 OSBPL8 oxysterol binding protein like 8 2.0000 0.0155
8 ENSG00000099139 PCSK5 proprotein convertase subtilisin/kexin type 5 2.0000 0.0155
9 ENSG00000142856 ITGB3BP integrin subunit beta 3 binding protein 2.0000 0.0002
10 ENSG00000175820 CCDC168 coiled-coil domain containing 168 2.0000 0.0002

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000157654 PALM2-AKAP2 PALM2-AKAP2 readthrough -1.5850 1.0000
63340 ENSG00000156009 MAGEA8 MAGE family member A8 -1.5850 1.0000
63339 ENSG00000155858 LSM11 LSM11, U7 small nuclear RNA associated -1.5850 0.5781
63338 ENSG00000154814 OXNAD1 oxidoreductase NAD binding domain containing 1 -1.5850 0.0010
63337 ENSG00000154143 PANX3 pannexin 3 -1.5850 0.0762
63336 ENSG00000152582 SPEF2 sperm flagellar 2 -1.5850 0.5781
63335 ENSG00000152219 ARL14EP ADP ribosylation factor like GTPase 14 effector protein -1.5850 1.0000
63334 ENSG00000151748 SAV1 salvador family WW domain containing protein 1 -1.5850 0.0025
63333 ENSG00000148225 WDR31 WD repeat domain 31 -1.5850 0.0015
63332 ENSG00000147246 HTR2C 5-hydroxytryptamine receptor 2C -1.5850 0.0175

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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