SHOGoiN Cell Methylome: GSM2481622
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481622 Profile download | 7010000000000000000000-772 | Sequence Read Archive | SRP074598 | SRP074598_M95 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | 8-cell embryo | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000244921 | MTCYBP18 | MT-CYB pseudogene 18 | 2.5518 | 0.0000 |
| 2 | ENSG00000249119 | MTND6P4 | MT-ND6 pseudogene 4 | 2.3836 | 0.0000 |
| 3 | ENSG00000254132 | MTND6P3 | MT-ND6 pseudogene 3 | 2.3433 | 0.0000 |
| 4 | ENSG00000099977 | DDT | D-dopachrome tautomerase | 2.3219 | 0.0126 |
| 5 | ENSG00000099984 | GSTT2 | glutathione S-transferase theta 2 (gene/pseudogene) | 2.3219 | 0.0126 |
| 6 | ENSG00000119013 | NDUFB3 | NADH:ubiquinone oxidoreductase subunit B3 | 2.3219 | 0.0002 |
| 7 | ENSG00000127515 | OR7A10 | olfactory receptor family 7 subfamily A member 10 | 2.3219 | 0.0000 |
| 8 | ENSG00000131982 | UBE2L2 | ubiquitin conjugating enzyme E2 L2 (pseudogene) | 2.3219 | 0.0002 |
| 9 | ENSG00000162757 | C1orf74 | chromosome 1 open reading frame 74 | 2.3219 | 0.0126 |
| 10 | ENSG00000200326 | RNA5SP391 | RNA, 5S ribosomal pseudogene 391 | 2.3219 | 0.0126 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000228157 | novel transcript | -1.5850 | 0.0584 | |
| 63340 | ENSG00000228074 | UBBP5 | ubiquitin B pseudogene 5 | -1.5850 | 0.5543 |
| 63339 | ENSG00000228016 | RAPGEF4-AS1 | RAPGEF4 antisense RNA 1 | -1.5850 | 0.5543 |
| 63338 | ENSG00000227825 | SLC9A7P1 | solute carrier family 9 member 7 pseudogene 1 | -1.5850 | 0.3081 |
| 63337 | ENSG00000227538 | HNRNPFP1 | heterogeneous nuclear ribonucleoprotein F pseudogene 1 | -1.5850 | 0.5543 |
| 63336 | ENSG00000227306 | novel transcript | -1.5850 | 0.0000 | |
| 63335 | ENSG00000227196 | IGHD4-23 | immunoglobulin heavy diversity 4-23 (non-functional) | -1.5850 | 0.3081 |
| 63334 | ENSG00000227120 | pseudogene similar to part of Cdon homolog (mouse) (CDON) | -1.5850 | 0.5543 | |
| 63333 | ENSG00000226908 | HIST1H2BPS3 | HIST1H2B pseudogene 3 | -1.5850 | 0.3081 |
| 63332 | ENSG00000226845 | EEF1GP3 | eukaryotic translation elongation factor 1 gamma pseudogene 3 | -1.5850 | 0.5543 |
