Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM2481622
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481622
Profile download
7010000000000000000000-772
Sequence Read Archive
SRP074598
SRP074598_M95
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
8-cell embryo
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000244921
MTCYBP18
MT-CYB pseudogene 18
2.5518
0.0000
2
ENSG00000249119
MTND6P4
MT-ND6 pseudogene 4
2.3836
0.0000
3
ENSG00000254132
MTND6P3
MT-ND6 pseudogene 3
2.3433
0.0000
4
ENSG00000099977
DDT
D-dopachrome tautomerase
2.3219
0.0126
5
ENSG00000099984
GSTT2
glutathione S-transferase theta 2 (gene/pseudogene)
2.3219
0.0126
6
ENSG00000119013
NDUFB3
NADH:ubiquinone oxidoreductase subunit B3
2.3219
0.0002
7
ENSG00000127515
OR7A10
olfactory receptor family 7 subfamily A member 10
2.3219
0.0000
8
ENSG00000131982
UBE2L2
ubiquitin conjugating enzyme E2 L2 (pseudogene)
2.3219
0.0002
9
ENSG00000162757
C1orf74
chromosome 1 open reading frame 74
2.3219
0.0126
10
ENSG00000200326
RNA5SP391
RNA, 5S ribosomal pseudogene 391
2.3219
0.0126
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000143390
RFX5
regulatory factor X5
-1.5850
0.0005
63127
ENSG00000143355
LHX9
LIM homeobox 9
-1.5850
0.1883
63126
ENSG00000142961
MOB3C
MOB kinase activator 3C
-1.5850
0.1883
63125
ENSG00000141434
MEP1B
meprin A subunit beta
-1.5850
0.0040
63124
ENSG00000140391
TSPAN3
tetraspanin 3
-1.5850
0.1883
63123
ENSG00000139874
SSTR1
somatostatin receptor 1
-1.5850
0.5543
63122
ENSG00000138942
RNF185
ring finger protein 185
-1.5850
0.3081
63121
ENSG00000138496
PARP9
poly(ADP-ribose) polymerase family member 9
-1.5850
0.3081
63120
ENSG00000138050
THUMPD2
THUMP domain containing 2
-1.5850
0.0000
63119
ENSG00000136754
ABI1
abl interactor 1
-1.5850
0.3081
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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