SHOGoiN Cell Methylome: GSM2481622

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481622


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7010000000000000000000-772Sequence Read ArchiveSRP074598SRP074598_M95Single-cell DNA methylome sequencing of human preimplantation embryosMethylome8-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000244921 MTCYBP18 MT-CYB pseudogene 18 2.5518 0.0000
2 ENSG00000249119 MTND6P4 MT-ND6 pseudogene 4 2.3836 0.0000
3 ENSG00000254132 MTND6P3 MT-ND6 pseudogene 3 2.3433 0.0000
4 ENSG00000099977 DDT D-dopachrome tautomerase 2.3219 0.0126
5 ENSG00000099984 GSTT2 glutathione S-transferase theta 2 (gene/pseudogene) 2.3219 0.0126
6 ENSG00000119013 NDUFB3 NADH:ubiquinone oxidoreductase subunit B3 2.3219 0.0002
7 ENSG00000127515 OR7A10 olfactory receptor family 7 subfamily A member 10 2.3219 0.0000
8 ENSG00000131982 UBE2L2 ubiquitin conjugating enzyme E2 L2 (pseudogene) 2.3219 0.0002
9 ENSG00000162757 C1orf74 chromosome 1 open reading frame 74 2.3219 0.0126
10 ENSG00000200326 RNA5SP391 RNA, 5S ribosomal pseudogene 391 2.3219 0.0126

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000228157 novel transcript -1.5850 0.0584
63340 ENSG00000228074 UBBP5 ubiquitin B pseudogene 5 -1.5850 0.5543
63339 ENSG00000228016 RAPGEF4-AS1 RAPGEF4 antisense RNA 1 -1.5850 0.5543
63338 ENSG00000227825 SLC9A7P1 solute carrier family 9 member 7 pseudogene 1 -1.5850 0.3081
63337 ENSG00000227538 HNRNPFP1 heterogeneous nuclear ribonucleoprotein F pseudogene 1 -1.5850 0.5543
63336 ENSG00000227306 novel transcript -1.5850 0.0000
63335 ENSG00000227196 IGHD4-23 immunoglobulin heavy diversity 4-23 (non-functional) -1.5850 0.3081
63334 ENSG00000227120 pseudogene similar to part of Cdon homolog (mouse) (CDON) -1.5850 0.5543
63333 ENSG00000226908 HIST1H2BPS3 HIST1H2B pseudogene 3 -1.5850 0.3081
63332 ENSG00000226845 EEF1GP3 eukaryotic translation elongation factor 1 gamma pseudogene 3 -1.5850 0.5543

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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