Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481623

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481623


Profile download
7010000000000000000000-772Sequence Read ArchiveSRP074598SRP074598_M96Single-cell DNA methylome sequencing of human preimplantation embryosMethylome8-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000251340 MTCYBP35 MT-CYB pseudogene 35 3.2124 0.0000
2 ENSG00000254132 MTND6P3 MT-ND6 pseudogene 3 2.6535 0.0000
3 ENSG00000167165 UGT1A6 UDP glucuronosyltransferase family 1 member A6 2.5850 0.0000
4 ENSG00000199024 MIR103A2 microRNA 103a-2 2.3219 0.0094
5 ENSG00000249262 mitochondrial ribosomal protein L19 (MRPL19) pseudogene 2.3219 0.0094
6 ENSG00000249901 novel transcript 2.3219 0.0094
7 ENSG00000275582 novel transcript, antisense to PANK2 2.3219 0.0000
8 ENSG00000283320 MIR103B2 microRNA 103b-2 2.3219 0.0094
9 ENSG00000264940 SNORD3C small nucleolar RNA, C/D box 3C 2.2951 0.0000
10 ENSG00000271128 chromosome 7 open reading frame 73 (C7orf73) pseudogene 2.2146 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000133731 IMPA1 inositol monophosphatase 1 -1.5850 0.1865
63127 ENSG00000132475 H3-3B H3.3 histone B -1.5850 0.0371
63126 ENSG00000131475 VPS25 vacuolar protein sorting 25 homolog -1.5850 0.0048
63125 ENSG00000125820 NKX2-2 NK2 homeobox 2 -1.5850 0.0077
63124 ENSG00000125414 MYH2 myosin heavy chain 2 -1.5850 1.0000
63123 ENSG00000122958 VPS26A VPS26, retromer complex component A -1.5850 0.0642
63122 ENSG00000120800 UTP20 UTP20 small subunit processome component -1.5850 0.3172
63121 ENSG00000120332 TNN tenascin N -1.5850 0.3172
63120 ENSG00000120306 CYSTM1 cysteine rich transmembrane module containing 1 -1.5850 0.0010
63119 ENSG00000119121 TRPM6 transient receptor potential cation channel subfamily M member 6 -1.5850 0.0371

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...