SHOGoiN Cell Methylome: GSM2481623

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481623


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7010000000000000000000-772Sequence Read ArchiveSRP074598SRP074598_M96Single-cell DNA methylome sequencing of human preimplantation embryosMethylome8-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000251340 MTCYBP35 MT-CYB pseudogene 35 3.2124 0.0000
2 ENSG00000254132 MTND6P3 MT-ND6 pseudogene 3 2.6535 0.0000
3 ENSG00000167165 UGT1A6 UDP glucuronosyltransferase family 1 member A6 2.5850 0.0000
4 ENSG00000199024 MIR103A2 microRNA 103a-2 2.3219 0.0094
5 ENSG00000249262 mitochondrial ribosomal protein L19 (MRPL19) pseudogene 2.3219 0.0094
6 ENSG00000249901 novel transcript 2.3219 0.0094
7 ENSG00000275582 novel transcript, antisense to PANK2 2.3219 0.0000
8 ENSG00000283320 MIR103B2 microRNA 103b-2 2.3219 0.0094
9 ENSG00000264940 SNORD3C small nucleolar RNA, C/D box 3C 2.2951 0.0000
10 ENSG00000271128 chromosome 7 open reading frame 73 (C7orf73) pseudogene 2.2146 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000230314 ELOVL2-AS1 ELOVL2 antisense RNA 1 -1.5850 0.0000
63340 ENSG00000230262 LINC02603 long intergenic non-protein coding RNA 2603 -1.5850 1.0000
63339 ENSG00000229960 novel transcript -1.5850 0.0371
63338 ENSG00000229899 pseudogene similar to part of the cytochrome c oxidase subunit I (COX1) -1.5850 0.1865
63337 ENSG00000229893 novel transcript, antisense to TAX1BP1 -1.5850 0.3172
63336 ENSG00000229708 MARK2P12 microtubule affinity regulating kinase 2 pseudogene 12 -1.5850 0.1865
63335 ENSG00000229696 KARSP1 lysyl-tRNA synthetase pseudogene 1 -1.5850 1.0000
63334 ENSG00000229440 pseudogene similar to part of BET1 homolog (S. cerevisiae) (BET1) -1.5850 1.0000
63333 ENSG00000229434 novel transcript -1.5850 1.0000
63332 ENSG00000229220 collagen, type XXII, alpha 1 (COL22A1) pseudogene -1.5850 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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